| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,005,136 – 18,005,230 |
| Length | 94 |
| Max. P | 0.657431 |
| Location | 18,005,136 – 18,005,230 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.34 |
| Shannon entropy | 0.38017 |
| G+C content | 0.55628 |
| Mean single sequence MFE | -36.50 |
| Consensus MFE | -20.93 |
| Energy contribution | -21.58 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18005136 94 + 27905053 AAACAACUUGCCACAUGCUUCGAAGCU--GCAGCUAUGGUA----GCAGCUAUGAAGCUAAGGGGCUGGGUAGCCUGGCGAGCUGUGGAUCCAUGGACUU ......((((((....((((((.((((--((.((....)).----)))))).))))))....(((((....)))))))))))(((((....))))).... ( -39.90, z-score = -2.69, R) >droSim1.chr3R 17821698 93 + 27517382 AAACAACUUGCCACAUGCUUCGAGGCU--GCAGCUAUGGCG----G-AGCUAUGGAGCUAAGGGGCUGGGUAGCCUGGCGAGCUGUGGAUCCAUGGACUU ...((.....(((((.(((((.(((((--((..(((((((.----.-.)))))))((((....))))..))))))).).))))))))).....))..... ( -36.30, z-score = -1.27, R) >droSec1.super_0 18374820 93 + 21120651 AAACAACUUGCCACAUGCUUCGAAGCU--GCAGCUAUGGCG----G-AGCUAUGGAGCUAAGGGGCUGGGUAGCCUGGCGAGCUGUGGAUCCAUGGACUU ......((((((....((((((.((((--.(.((....)))----.-)))).))))))....(((((....)))))))))))(((((....))))).... ( -35.50, z-score = -1.25, R) >droYak2.chr3R 18855188 97 + 28832112 AAACAACUUGCCACAUGCUUCGAAGCU--GCAGCUAUGGAGCUAUGGAGCUAUGGGGCUGGGGAGCUGG-CAAGCUGGCGAACUGUGGAUCCAUGGACUU ...((.((((((.(((((((((.((((--.((....)).)))).)))))).))).((((....))))))-)))).)).....(((((....))))).... ( -36.70, z-score = -2.04, R) >droEre2.scaffold_4820 397821 99 - 10470090 AAACAACUUGCCACAUGCUUCGAGGCUCUGCAGCUAUGGAGCUAUGGGGAUAUGGGGCUGGGGAGCUGG-CAAGCUGGCGAGCUGUGGAUCCAUGGACUU ......(((((((...((((...((((((.(((((......((....))......))))).))))))..-.)))))))))))(((((....))))).... ( -37.50, z-score = -1.53, R) >droAna3.scaffold_13340 9004152 85 + 23697760 AAACAACUUGCCACAUGCUUUGAGGCA--GGAGCGGCAGCG----GUAGCGAC--AGUU--GCAGUUGC---GGCAGUAGAGCUACAG--CCGUGGACUU ......((((((.((.....)).))))--)).(((((....----(((((.((--.(((--((....))---))).))...))))).)--))))...... ( -33.10, z-score = -1.81, R) >consensus AAACAACUUGCCACAUGCUUCGAAGCU__GCAGCUAUGGCG____G_AGCUAUGGAGCUAAGGAGCUGG_UAGCCUGGCGAGCUGUGGAUCCAUGGACUU ......(((((((((.(((((..((((......(((((((........)))))))))))..))))))).......)))))))(((((....))))).... (-20.93 = -21.58 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:22 2011