| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,967,501 – 17,967,594 |
| Length | 93 |
| Max. P | 0.780780 |
| Location | 17,967,501 – 17,967,594 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 67.00 |
| Shannon entropy | 0.55075 |
| G+C content | 0.50375 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -9.96 |
| Energy contribution | -11.48 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17967501 93 + 27905053 CAGUGGCAGUAACAGAGGCAGAGGCAGACGACGACGUCGUCGGAGUUUCAAACAGGCCCUGCGAACAGGAACUGUUGACUGCUUUUGAACUUG (((.((((((..........(((((...(((((....)))))..))))).(((((..((((....))))..))))).)))))).)))...... ( -34.20, z-score = -2.40, R) >droYak2.chr3R 18816319 81 + 28832112 ------------CAGUGGCAGCGGCAUAGGACGACGACGUCGGAGUUUCAAACAGGCCCUGCGAACAGGAACUGUUGACUGCUUUUGAACUUG ------------(((.((((((....(..(((..((....))..)))..)(((((..((((....))))..)))))).))))).)))...... ( -24.80, z-score = -0.96, R) >droSec1.super_0 18337693 77 + 21120651 ------CAGUGGCAGUAACAGAGGCAGACGACGACGACGACG----------UCGGAGUUUCAAACAGGAACUGUUGACUGCUUUUGAACUUG ------............(((((((((.((((((((....))----------))..((((((.....)))))))))).)))))))))...... ( -26.10, z-score = -2.62, R) >droSim1.chr3R 17784137 83 + 27517382 CAGUGGCAGUAACAGAGGCAGAGGCAGACGACGACGACGACG----------UCGGAGUUUCAAACAGGAACUGUUGACUGCUUUUGAACUUG (((.(((((((((((..((....))((((..(((((....))----------)))..))))..........))))).)))))).)))...... ( -27.30, z-score = -2.36, R) >droVir3.scaffold_13047 10710483 75 - 19223366 --------------AAAUCGCUGAGAAAGGAUGACGAUGUCGUAG----ACGAAGAGUUUUCCAACAGAAGCUUUUGACUGCUUUUGAACUUG --------------........(((...(((.(((....(((...----.)))...))).)))..(((((((........)))))))..))). ( -18.50, z-score = -1.30, R) >consensus ______CAGU__CAGAGGCAGAGGCAGACGACGACGACGUCG_AG____A__CAGGACUUUCAAACAGGAACUGUUGACUGCUUUUGAACUUG ..................(((((((((..((((....))))......................(((((...)))))..)))))))))...... ( -9.96 = -11.48 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:21 2011