| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,963,231 – 17,963,282 |
| Length | 51 |
| Max. P | 0.646390 |
| Location | 17,963,231 – 17,963,282 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -17.90 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.02 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17963231 51 - 27905053 GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. ( -17.90, z-score = -1.02, R) >droSim1.chr3R 17779487 51 - 27517382 GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. ( -17.90, z-score = -1.02, R) >droSec1.super_0 18333439 51 - 21120651 GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. ( -17.90, z-score = -1.02, R) >droYak2.chr3R 18811792 51 - 28832112 GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. ( -17.90, z-score = -1.02, R) >droEre2.scaffold_4820 355380 51 + 10470090 GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. ( -17.90, z-score = -1.02, R) >consensus GAAAAUCGAUUUUAGCGCUGCCUGCGCUCGCACGGGCGGCCUUUUGGAUGC ....(((.(....((.((((((((.(....).))))))))))..).))).. (-17.90 = -17.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:19 2011