| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,245,733 – 8,245,812 |
| Length | 79 |
| Max. P | 0.624030 |
| Location | 8,245,733 – 8,245,812 |
|---|---|
| Length | 79 |
| Sequences | 11 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 81.81 |
| Shannon entropy | 0.39282 |
| G+C content | 0.55466 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -15.38 |
| Energy contribution | -14.98 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8245733 79 - 23011544 GUGGCCAAUCCUCGAGGAUGCAGACGGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUUAUCAGGUAACC ((.(((.((((....))))...((..(((..(((((((((........))))))))).......)))..)).))).)). ( -24.70, z-score = -1.14, R) >droGri2.scaffold_15252 13416069 79 - 17193109 GUGCCAAAUCCAUCAAAUCGAGCACCGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAAGAGAAAAUAAUCAGGUAACC .((((..........................(((((((((........)))))))))..((........)).))))... ( -19.70, z-score = -1.36, R) >droMoj3.scaffold_6500 5428215 79 - 32352404 GUGGCCAGUUCACGAAAUCGAAUACCAUCAAGUACGCUGUGAGGGCGGGCAGCGUACAACACACGAUCAUCAGGUAACC ((.(((.((((........))))........(((((((((........)))))))))...............))).)). ( -20.30, z-score = -0.75, R) >droVir3.scaffold_12963 15981613 79 - 20206255 GUGGCCAGGCGAUCAGGUCGAGUACCGUCAAGUACGCUGUGGAGGCAAGCAGCGUGCAGGAGAAGAUCAUCAGGUAAUC ...(((.(..((((.(((.....))).((..(((((((((........)))))))))..))...))))..).))).... ( -26.90, z-score = -2.60, R) >droSec1.super_3 3742377 78 - 7220098 GUGGCCAAUCCUCGAGGAUGCAGACGGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUUAUCAGGUAAC- ...(((.((((....))))...((..(((..(((((((((........))))))))).......)))..)).)))...- ( -24.00, z-score = -1.26, R) >droWil1.scaffold_180703 3435699 78 + 3946847 GGGGCAAAUCAACGAAAGUAUCGACGGUUAAGUACGCUGUAGAAGCAAGCAGUGUACAAGAGAAGAUCAUAAGGUAAC- (..((.((((..(((.....)))..))))..(((((((((........)))))))))................))..)- ( -16.80, z-score = -2.70, R) >droYak2.chr2L 10881762 79 - 22324452 GUGGCCAAUCCUCCAGGAUGCAGACGGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUUAUCAGGUAACA ((.(((((((((((..(((.......)))..(((((((((........))))))))).))))..))))....))).)). ( -25.80, z-score = -1.33, R) >droEre2.scaffold_4929 17154465 79 - 26641161 GUGGCCAAUCCUCGAGGAUGCAGACGGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUUAUCAGGUAACU ((.(((.((((....))))...((..(((..(((((((((........))))))))).......)))..)).))).)). ( -25.10, z-score = -1.12, R) >droAna3.scaffold_12916 10159196 79 + 16180835 GUGGCCAGUCCUCGAGGAUGCAGACGGUGAAGUACGCUGUGGGGGCGAGCAGCGUGCAGGAGAAGAUCAUCAGGUAACU ((.(((.((((....))))......(((((.(((((((((........))))))))).........))))).))).)). ( -25.10, z-score = -0.52, R) >dp4.chr4_group3 7759800 79 + 11692001 GCGGCAGAUCCUCCCGGAUCAGCACCGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUCAUCAGGUAACC ...((.(((((....))))).))(((.((..(((((((((........)))))))))..))((......)).))).... ( -27.50, z-score = -1.38, R) >droPer1.super_1 4867429 79 + 10282868 GCGGCAGAUCCUCGCGGAUCAGCACCGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUCAUCAGGUAACC ...((.(((((....))))).))(((.((..(((((((((........)))))))))..))((......)).))).... ( -27.50, z-score = -1.29, R) >consensus GUGGCCAAUCCUCGAGGAUGAAGACGGUCAAGUACGCUGUGGAGGCGAGCAGCGUGCAGGAGAAGAUCAUCAGGUAACC .......(((......)))............(((((((((........)))))))))...................... (-15.38 = -14.98 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:35 2011