| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,959,413 – 17,959,469 |
| Length | 56 |
| Max. P | 0.926717 |
| Location | 17,959,413 – 17,959,469 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 64.89 |
| Shannon entropy | 0.71943 |
| G+C content | 0.45598 |
| Mean single sequence MFE | -14.99 |
| Consensus MFE | -6.57 |
| Energy contribution | -6.51 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.79 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17959413 56 - 27905053 UCACUCUCUUGGUUCGAUGCAACCGAUUUAGUUCGAG-UUCGAAGGGUUUCGAACUU ........((((((......))))))...((((((((-..(....)..)))))))). ( -15.20, z-score = -1.16, R) >droSim1.chr3R 17774613 56 - 27517382 UCACUCUCUUGGUUCGAUGCAACCGAUUAAGUUCGAG-UUCGAAGGGCUACGAACUU ........((((((......))))))..(((((((((-((.....)))).))))))) ( -14.40, z-score = -1.05, R) >droSec1.super_0 18329742 56 - 21120651 UCACUCUCUUGGUUCGAUGCAACCGAUUGAGUUCGAG-UUCGAAGGACUACGAACUU ..((((..((((((......))))))..))))..(((-((((........))))))) ( -16.10, z-score = -1.42, R) >droYak2.chr3R 18807735 56 - 28832112 UCACUUUUUCGGUUCGAUGCAACCGUUUGAGUUCGAG-UUCGAAGGGCUUCGAACUU ..((((...(((((......)))))...))))..(((-((((((....))))))))) ( -17.70, z-score = -1.76, R) >droEre2.scaffold_4820 351396 56 + 10470090 GCACUCUUUCGGUUCGAUGCAACCGUUUGAGUUCGAG-UUCGAAGGGCUUCGAACUU (.((((...(((((......)))))...)))).)(((-((((((....))))))))) ( -20.20, z-score = -2.37, R) >droAna3.scaffold_13340 8961075 52 - 23697760 -----ACAAUCGUGCAACGUUGCAGAGUCACCCUGUGUUUCACAGUGCUGCCGUUGA -----.........(((((..((((.......(((((...)))))..))))))))). ( -12.70, z-score = -0.05, R) >droGri2.scaffold_15074 1093562 51 - 7742996 UCAUUUUAAUAGUUUCAAAUGAUUGGUUUAGGCCUUG--UCGAAGGAUGAGUA---- ((((((.((....)).))))))...........((..--((....))..))..---- ( -8.60, z-score = -0.73, R) >consensus UCACUCUCUUGGUUCGAUGCAACCGAUUGAGUUCGAG_UUCGAAGGGCUACGAACUU .........(((((......)))))....(((((((...((....))..))))))). ( -6.57 = -6.51 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:17 2011