Locus 10987

Sequence ID dm3.chr3R
Location 17,959,196 – 17,959,292
Length 96
Max. P 0.853410
window15100

overview

Window 0

Location 17,959,196 – 17,959,292
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 87.11
Shannon entropy 0.23040
G+C content 0.39077
Mean single sequence MFE -22.62
Consensus MFE -17.48
Energy contribution -19.32
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.92
SVM RNA-class probability 0.853410
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 17959196 96 - 27905053
UUAGCCGCGCCACAAUUGCAUUCUUAUAUUUGAAAUACGUACUAAUUGGGCGAAUUUAGUUCAUUUAGUACAAUUGAUGCGCAUGCGUCUCUCUUG
...((.((((..(((((...(((........)))....(((((((.(((((.......))))).))))))))))))..))))..)).......... ( -25.20, z-score =  -2.46, R)
>droEre2.scaffold_4820 351174 95 + 10470090
CUAGCCGCGCCACAAAGGCCUUUUUAUAUUUGAACUGCGAACCAAUUCGACGAAUUUAGUUCUUUUAGUACAUGUGA-GCGCAUGCGCCUCUCUUA
...((.((((((((...((...((((....))))..))((((.(((((...)))))..))))..........)))).-))))..)).......... ( -18.30, z-score =   0.09, R)
>droYak2.chr3R 18807520 95 - 28832112
UAAGCCGCGCCACAAAUGCUUUUUUAUAUUUGAAAUCCGAACUAAUUCGACGAAUUUAGUUCUUUUAGUACAUCUGA-GCGCAUGCGCCUCUCUUA
...((.((((((((((((........))))))......((((((((((...))).)))))))............)).-))))..)).......... ( -17.70, z-score =  -0.98, R)
>droSec1.super_0 18329527 95 - 21120651
UUAGCCGCGCCACAAAUGCAUUCUUAUAUUUGAAAUAAGUACUAAUUGGACGAAUUUAGUUCAUUUAGUACACUUGA-GCGCAUGCGCCUCUCUUU
...((.((((((((((((........))))))......(((((((.(((((.......))))).)))))))...)).-))))..)).......... ( -25.70, z-score =  -3.29, R)
>droSim1.chr3R 17774396 95 - 27517382
UUAGCCGCGCCGAAAAUGUAUUCAUAUAUUUGAAAUAAGUACUAAUUGGACGAAUUUAGUUCAUUUAGUACACUUGA-GCGCAUGCGCCUUUCUUU
...((.((((((((((((((....))))))).......(((((((.(((((.......))))).)))))))..))).-))))..)).......... ( -26.20, z-score =  -3.41, R)
>consensus
UUAGCCGCGCCACAAAUGCAUUCUUAUAUUUGAAAUACGUACUAAUUGGACGAAUUUAGUUCAUUUAGUACACUUGA_GCGCAUGCGCCUCUCUUA
...((.((((..((((((........))))))......(((((((.(((((.......))))).))))))).......))))..)).......... (-17.48 = -19.32 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:16 2011