| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,950,402 – 17,950,494 |
| Length | 92 |
| Max. P | 0.982217 |
| Location | 17,950,402 – 17,950,494 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 91.12 |
| Shannon entropy | 0.14458 |
| G+C content | 0.48641 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -26.08 |
| Energy contribution | -25.95 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17950402 92 + 27905053 AAAAGCGAAAAACUCUGCAAAAGAGUCGCGAUUUUCUUAGCGACAUUUUCAUGGCGCGUGGUCGAAACCAUCAGCGCCAAAAGCAACAGCAG ....(((((((..(((.....)))(((((..........))))).))))).(((((((((((....)))))..))))))...))........ ( -29.90, z-score = -2.97, R) >droYak2.chr3R 18798096 92 + 28832112 AAAAGCGUAAAACUCUGCAGAAGAGUCGCGAUUUUCUAAGCGACAUUUUCAUGGCGCGUGGUCGAAAUCAUCAGCGUCAAAAGCAGCAGCAG ............((((((.((((((((((..........))))).))))).((((((.((((.(....)))))))))))...)))).))... ( -28.60, z-score = -2.18, R) >droEre2.scaffold_4820 342306 92 - 10470090 AAAAGCGCAAGGCUCUGCAAAAGAGUCGCGAUUUUCUUAGCGACAUUUUCAUGGCGCGUGGUCGAAACCAUCAGCGCCAAAAGCAGCAGCAG .....(....)(((((((......(((((..........))))).......(((((((((((....)))))..))))))...)))).))).. ( -35.30, z-score = -3.34, R) >droAna3.scaffold_13340 8952115 92 + 23697760 AGAAGCGAAAAACUCUACAGAAGAGUCGCGACUUCCUCAGCGACAUUUUCAUGGCGCGUGGUCGCAACCAUCAGCGUCAAAAGCAACAUCAG ....((.............((((((((((..........))))).))))).(((((((((((....)))))..))))))...))........ ( -26.90, z-score = -2.30, R) >consensus AAAAGCGAAAAACUCUGCAAAAGAGUCGCGAUUUUCUUAGCGACAUUUUCAUGGCGCGUGGUCGAAACCAUCAGCGCCAAAAGCAACAGCAG ....(((((((..(((.....)))(((((..........))))).))))).(((((((((((....)))))..))))))...))........ (-26.08 = -25.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:14 2011