| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,921,658 – 17,921,724 |
| Length | 66 |
| Max. P | 0.547313 |
| Location | 17,921,658 – 17,921,724 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 95.96 |
| Shannon entropy | 0.05565 |
| G+C content | 0.49495 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -17.94 |
| Energy contribution | -17.83 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17921658 66 + 27905053 CGGGGAACUCAAGGUGCCGCCAGUCAUUGAACUUAAACGCUGAGGGAAUUCUCUUGGCUUAUACAU .((((.((.....)).)).)).................((..((((....))))..))........ ( -16.00, z-score = -0.58, R) >droSim1.chrU 7294186 66 - 15797150 CGGGGAACUCAAGGUGCCGCCAGUCAUUGAACUUAAGUGCUGAGGGAAUUCUCUUGGCUCUUACAU .((((.((.....)).)).))............((((.((..((((....))))..)).))))... ( -19.30, z-score = -0.96, R) >droSec1.super_0 18290386 66 + 21120651 CGGGGAACUCAAGGUGCCGCCAGUCAUUGAACUUAAGUGCUGAGGGAAUUCUCUUGGCUCUUACAU .((((.((.....)).)).))............((((.((..((((....))))..)).))))... ( -19.30, z-score = -0.96, R) >consensus CGGGGAACUCAAGGUGCCGCCAGUCAUUGAACUUAAGUGCUGAGGGAAUUCUCUUGGCUCUUACAU .((((.((.....)).)).))............((((.((..((((....))))..)).))))... (-17.94 = -17.83 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:09 2011