| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,236,285 – 8,236,375 |
| Length | 90 |
| Max. P | 0.780582 |
| Location | 8,236,285 – 8,236,375 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 61.72 |
| Shannon entropy | 0.71015 |
| G+C content | 0.54541 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -10.38 |
| Energy contribution | -11.53 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8236285 90 - 23011544 UAGAUCUGCGCA-------CAGAAGCCCGUAUUUCUAUUCUCAGCUGGGAAUUUGGUAUGUGGAAUGCCAAAUGGGCG---GGGAUAUAGUCGUGGGCGU----- ....((((....-------)))).(((((.....((((((((.(((....(((((((((.....))))))))).))).---)))).))))...)))))..----- ( -30.50, z-score = -1.61, R) >droSim1.chr2L 8020751 89 - 22036055 UAGAUCUGCGCA-------CAGAAGCCCGUAUUUCUAUUCUCAGCUGGGAAUUUGGCAUGUGGAAUGCCAAAUGGGCG---GGGACGUGGGCGUGGGCU------ .((.((..(((.-------((...((((((......((((((....))))))(((((((.....)))))))))))))(---....).)).)))..))))------ ( -35.40, z-score = -2.35, R) >droSec1.super_3 3733162 89 - 7220098 UAGAUCUGCGCA-------CAGAAGCCCGUAUUUCUAUUCUCAGCUGGGAAUUUGGCAUGUGGAAUGCCAAAUGGGCG---GGGACGUGGGCGUGGGCU------ .((.((..(((.-------((...((((((......((((((....))))))(((((((.....)))))))))))))(---....).)).)))..))))------ ( -35.40, z-score = -2.35, R) >droYak2.chr2L 10869426 73 - 22324452 UAGAUCUGGGCA-------CAGAAGCCCGUAUUUCAAUUCUCAGCUGGGAGU-------GUGGUAUGCCAAAUGGGCG---GAGCUGUGG--------------- ..........((-------(((..((((((......((((((....))))))-------.(((....))).)))))).---...))))).--------------- ( -25.10, z-score = -1.35, R) >droEre2.scaffold_4929 17144893 82 - 26641161 UAGAUCUGCGCA-------CAGAAGCCCGUAUUUCUAUUCCCAGCUGGGAGU-------GUGGAAUGCCAAAUGGGCG---GGGGCGUGGUCAUGGGCG------ ..((((.((((.-------(....((((((((((((((((((....))))))-------).))))))).....)))).---..))))))))).......------ ( -32.90, z-score = -1.62, R) >droAna3.scaffold_12916 10151008 95 + 16180835 UAGAUCUGGAGAGCGAGGCCAGAAGCCCGUAUUUC-GCCCGUAUUUCCCAGAUGGAUA-UUGGGAUAGCAGGAAGGGG---GGAGCUUGGGCAUGGGCGU----- ....(((((.........))))).((((((.....-(((((..(..(((...((..((-(....))).)).....)))---..)...)))))))))))..----- ( -31.20, z-score = -0.27, R) >droWil1.scaffold_180703 3428007 87 + 3946847 ----------------CAAAAAAAGCCCGCAUGGUAACUC--AACUGGCAGAACAAGGAGGCAAGGCCCGGGAAGGCGUUACAGAUGCUAAUGUGGGCGUGACAA ----------------........((((((((((((.(((--...((......))..)))(.((.(((......))).)).)...)))).))))))))....... ( -26.10, z-score = -0.97, R) >consensus UAGAUCUGCGCA_______CAGAAGCCCGUAUUUCUAUUCUCAGCUGGGAGUUUGG_A_GUGGAAUGCCAAAUGGGCG___GGGACGUGGGCGUGGGCG______ ........................((((((.......(((((....)))))...............(((.....)))...............))))))....... (-10.38 = -11.53 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:34 2011