| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,909,982 – 17,910,092 |
| Length | 110 |
| Max. P | 0.569024 |
| Location | 17,909,982 – 17,910,092 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.56 |
| Shannon entropy | 0.48739 |
| G+C content | 0.42784 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -15.92 |
| Energy contribution | -17.84 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17909982 110 + 27905053 UUUUUAUGAAGUGCACUGCAAAUAUUAAUUUUUCAGGAGGCUUAAUGCUUUGGGCAACAUCUUUAGAUUGCCCA---------CAUCCUGGAGAGAACC-CACACUGCGAGCCCUGACAU .....(((.((.((..((((........(((((((((((((.....))).((((((..(((....)))))))))---------..))))))))))....-.....)))).)).))..))) ( -28.23, z-score = -1.59, R) >droSim1.chr3R 17735386 120 + 27517382 UUUUUAUGAAGUGCACUGUAAAUAUUAAUUCUCUAGGAGGCUUAAUGCUUAGGGCAACCUCGGCAAUUUCUUAAAAUUGCCCACAUCCUGGGGAGAAGCUCGCACUGCGAAUCAAAGCAU .........(((((...............((((((((((((.....))).(((....))).((((((((....))))))))....)))))))))(.....))))))((........)).. ( -35.40, z-score = -2.20, R) >droSec1.super_0 18279096 119 + 21120651 UUUUUAUGAAGUGCACUGUAAAUAUUAAUUCUCUAGGAGGCUUUAUGCUUAGGGUAACCUCGGCAAUUUCUUAAAAUUGCGCACAUCCUGGGGAGAAGCUCGCACUGCGAAUCAAAGCA- .........(((((...............(((((((((.((.........(((....)))..(((((((....)))))))))...)))))))))(.....))))))((........)).- ( -31.90, z-score = -1.23, R) >droYak2.chr3R 18749598 118 + 28832112 -UUUUAUGAAGCGCACUGCAAAUAUUCAUUUCCAAGGAGGCAAAAUGCUUUGGGCAACCUCAGCAAUAUAUUAAAAUUUCCCACAUCCGGGGGAGAAAC-CGCAUCGCGAAUCCUGCCCU -......((..(((..(((...........((....))((.....((((..((....))..))))...........((((((........))))))..)-))))..)))..))....... ( -27.70, z-score = -0.07, R) >droEre2.scaffold_4820 302984 99 - 10470090 CUUUUAUGAAGCGCACUGCAAAUAUUUACUUUCAUGAAGGCGUAAUGCUUUGGGCAACCUCAGCAAUUUCUU--------------------GAAAGUC-GGCACCGCGAAUCCUGACAU ...(((.((..(((..(((........(((((((.((((......((((..((....))..)))).)))).)--------------------)))))).-.)))..)))..)).)))... ( -24.60, z-score = -1.07, R) >consensus UUUUUAUGAAGUGCACUGCAAAUAUUAAUUUUCAAGGAGGCUUAAUGCUUUGGGCAACCUCAGCAAUUUCUUAAAAUU_C_CACAUCCUGGGGAGAAGC_CGCACUGCGAAUCCUGACAU .......((..((((.(((.........(((((((((((((.....)))..((....))..........................))))))))))......))).))))..))....... (-15.92 = -17.84 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:04 2011