| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,889,780 – 17,889,875 |
| Length | 95 |
| Max. P | 0.736800 |
| Location | 17,889,780 – 17,889,875 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 87.84 |
| Shannon entropy | 0.21728 |
| G+C content | 0.44123 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -22.70 |
| Energy contribution | -22.78 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17889780 95 - 27905053 GAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGUGGUGACUUG---GCAAAAUAUCGUUUUUCUUGACCAGCAAGCUCUGGAUGUUGA ..((((((((((((((....((((....)))).......((.(.(....).).---))........)))))))))))))).................. ( -26.50, z-score = -1.28, R) >droSim1.chr3R 17715341 95 - 27517382 GAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGCGGUGACUUG---GCAAAAUAUCGUUUUUCUUGACCAGCAAGCUCUGGUAGUUGA ..((((((((((((((....((((....)))).......((.(.(....).).---))........))))))))))))))...((((.....)))).. ( -26.60, z-score = -1.19, R) >droSec1.super_0 18259184 87 - 21120651 GAUGGUCAGGAGAGGAAAGCGGUUCUAUAACCUUUAUAAGUGGCGGUGACUUGGCAGCAAAAUAUCGCUUUUCUUGACCAGCAAGAU----------- ..(((((((((((.......((((....)))).........(((((((..(((....)))..)))))))))))))))))).......----------- ( -25.70, z-score = -1.86, R) >droYak2.chr3R 18728100 95 - 28832112 GAUGGUCAGGAGAGGCAAACGGUUCCAUAACUUUUGUAAGUGGUGGUGACUUG---GCAAAAUAUCGCUUUUCUUGACCAGCCAACUCUAGAUGUUGA ..((((((((((((((....((((((((.((((....)))).)))).)))).(---(.......))))))))))))))))..((((.......)))). ( -32.00, z-score = -2.73, R) >droEre2.scaffold_4820 280956 95 + 10470090 GAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUGUAAGUGAUGGUGACUUG---GCAAAAUAUCGGUUUUCUUGACCAGCAAGCUCUGGAUGUUGA ..(((((((((((((((((.((((....)))))))))..((.(.(....).).---))..........)))))))))))).................. ( -25.80, z-score = -0.88, R) >consensus GAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGUGGUGACUUG___GCAAAAUAUCGCUUUUCUUGACCAGCAAGCUCUGGAUGUUGA ..((((((((((((((....((((....))))............(....)................)))))))))))))).................. (-22.70 = -22.78 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:02 2011