| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,878,476 – 17,878,549 |
| Length | 73 |
| Max. P | 0.734501 |
| Location | 17,878,476 – 17,878,549 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.37111 |
| G+C content | 0.40744 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.29 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17878476 73 - 27905053 -------GACAUUUGGUGCGGCCUAAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC-GCGUCUCAUAAUCAAUAUAU -------.....(((((.((..(((.......)))..)).......((((((((.....)-)))))))...)))))..... ( -18.50, z-score = -2.16, R) >droAna3.scaffold_13340 8883914 76 - 23697760 GCCGUUCGGCGCUCGAUUUGGACCAAAUUUAAUCGAUCGAGCAGCAGACCUAGGAGGCUCUGCCUUUCACAUACAU----- (((....)))((((((((((((.....))))...)))))))).(((((((.....)).))))).............----- ( -23.80, z-score = -2.21, R) >droEre2.scaffold_4820 269621 73 + 10470090 -------GCCAUUUGGUGCGGCCUAAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC-GCGUCUCAUAAUCAAUAUAU -------(((....))).((..(((.......)))..)).......((((((((.....)-)))))))............. ( -18.60, z-score = -2.07, R) >droYak2.chr3R 18716522 73 - 28832112 -------GGCAUUUGGUGCGGCCUGAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC-GCGUCCCAUAAUCAAUAUAU -------((((((((((.(...............))))))))).....((((((.....)-)))))))............. ( -13.86, z-score = 0.22, R) >droSec1.super_0 18248071 73 - 21120651 -------GCCAUUUGGAGCGGCCUAAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC-GCGUCUCAUAAUCAAUAUAU -------.((....))..((..(((.......)))..)).......((((((((.....)-)))))))............. ( -17.20, z-score = -1.57, R) >droSim1.chr3R 17702615 73 - 27517382 -------GCCAUUUGGUGCGGCCUAAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC-GCGUCUCAUAAUCAAUAUAU -------(((....))).((..(((.......)))..)).......((((((((.....)-)))))))............. ( -18.60, z-score = -2.07, R) >consensus _______GCCAUUUGGUGCGGCCUAAAUUUAAUAGAUCGAAUGAAAGAGAUGCGUAAGUC_GCGUCUCAUAAUCAAUAUAU .........((((((((..................))))))))...(((((((........)))))))............. (-11.78 = -12.29 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:01 2011