| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,878,145 – 17,878,199 |
| Length | 54 |
| Max. P | 0.763905 |
| Location | 17,878,145 – 17,878,199 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 75.86 |
| Shannon entropy | 0.42161 |
| G+C content | 0.31467 |
| Mean single sequence MFE | -8.29 |
| Consensus MFE | -7.04 |
| Energy contribution | -8.03 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17878145 54 - 27905053 ----------UGCCUUGAAUGGGAUUUAUUAUA-----AUAAUAAAUGUCUUUUAAGUACACACACGCA ----------...((((((.((.((((((((..-----.)))))))).)).))))))............ ( -9.20, z-score = -1.55, R) >droSim1.chr3R 17702298 53 - 27517382 ----------UGCCUUGAAUGGGAUUUAUUAUA-----AUAAUAAAUGUC-UUUAAGUACACACACGCA ----------...((((((.((.((((((((..-----.)))))))).))-))))))............ ( -8.60, z-score = -1.31, R) >droSec1.super_0 18247750 53 - 21120651 ----------UGCCUUGAAUGGGAUUUAUUAUA-----AUAAUAAAUGUC-UUUAAGUACACACACGCA ----------...((((((.((.((((((((..-----.)))))))).))-))))))............ ( -8.60, z-score = -1.31, R) >droYak2.chr3R 18716215 53 - 28832112 ----------UGCCUUGAAUGGGAUUUAUUAUA-----AUAAUAAAUGUC-UUUAAGUACACACACACA ----------...((((((.((.((((((((..-----.)))))))).))-))))))............ ( -8.60, z-score = -1.50, R) >droEre2.scaffold_4820 269321 53 + 10470090 ----------UGCCUUGAAUGGGAUUUAUUAUA-----AUAAUAAAUGUC-UUUAAGUACGCACACGCA ----------(((((((((.((.((((((((..-----.)))))))).))-))))))...)))...... ( -10.00, z-score = -1.53, R) >droAna3.scaffold_13340 8883627 50 - 23697760 ----------CGCCUUGGACGGGA---AUUAAA-----AUAAUAAAUGUC-UUUAAGUACACUCACGCA ----------.((...(((((...---((((..-----.))))...))))-)....((......)))). ( -3.60, z-score = 1.04, R) >droVir3.scaffold_13047 10611794 69 + 19223366 UGCGUAUAAUUAGGCUAUAGGGUGUUUCUUACACAUUGUUAACAAUUGUUACUUGAAUUAGCACAUUCA .............((((((((((((.....)))).....((((....))))))))...))))....... ( -9.40, z-score = 0.43, R) >consensus __________UGCCUUGAAUGGGAUUUAUUAUA_____AUAAUAAAUGUC_UUUAAGUACACACACGCA .............((((((.((.(((((((((......))))))))).)).))))))............ ( -7.04 = -8.03 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:01 2011