| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,874,827 – 17,874,879 |
| Length | 52 |
| Max. P | 0.839543 |
| Location | 17,874,827 – 17,874,879 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 98.09 |
| Shannon entropy | 0.03194 |
| G+C content | 0.46342 |
| Mean single sequence MFE | -13.56 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17874827 52 - 27905053 GUUCCAUGUG-UUUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA .(((((((((-(((((((.(((....))).))))))))....))))).))).. ( -13.80, z-score = -1.44, R) >droSim1.chr3R 17698953 52 - 27517382 GUUCCAUGUG-UUUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA .(((((((((-(((((((.(((....))).))))))))....))))).))).. ( -13.80, z-score = -1.44, R) >droSec1.super_0 18244433 53 - 21120651 GUUCCAUGUGUUUUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA .............((((..((((...((((.......)))).))).)..)))) ( -13.40, z-score = -1.20, R) >droYak2.chr3R 18712794 51 - 28832112 GUUCCAUGUG--UUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA ..........--.((((..((((...((((.......)))).))).)..)))) ( -13.40, z-score = -1.36, R) >droEre2.scaffold_4820 265846 51 + 10470090 GUUCCAUGUG--UUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA ..........--.((((..((((...((((.......)))).))).)..)))) ( -13.40, z-score = -1.36, R) >consensus GUUCCAUGUG_UUUUUUUGCUGCGUGUGGGGAAGAAACCCGAGCAUGUGAAAA .............((((..((((...((((.......)))).))).)..)))) (-13.40 = -13.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:34:00 2011