| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,869,810 – 17,869,904 |
| Length | 94 |
| Max. P | 0.626364 |
| Location | 17,869,810 – 17,869,904 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.12 |
| Shannon entropy | 0.14755 |
| G+C content | 0.46979 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -18.50 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17869810 94 - 27905053 GAGAGAGCCCGGAGAGAGGUGUAAGUAGUGUGCGCUCCGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUCGGUU ........((((((.(((((((..((..(((((((..(.....)..)))))))...((.......)).......))..))))))).)))))).. ( -30.10, z-score = -3.31, R) >droSim1.chr3R 17693677 84 - 27517382 GAGAGAGCACGGAGAGAG---------GUGUGCGCU-CGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUGGGUU .....(((.((((((((.---------((((((.((-(.....)))))))))....((.......))..............)))).)))).))) ( -20.00, z-score = -1.26, R) >droSec1.super_0 18239460 93 - 21120651 GAGAGAGCACGGAGAGAGGUGUAAGUAGUGUGCGCU-CGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUGGGUU .....(((.(.(((.(((((((..((.((((((.((-(.....)))))))))....((.......)).......))..))))))).))).)))) ( -25.30, z-score = -2.55, R) >droYak2.chr3R 18707629 92 - 28832112 GAGAGAGCGCGGAGAGAG-UGUAAGUAGUGUGCGCU-CGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUGGGUU .....(((.((((((((.-(((..((.((((((.((-(.....)))))))))....((.......)).......))..))))))).)))).))) ( -24.00, z-score = -1.64, R) >droEre2.scaffold_4820 260919 84 + 10470090 GAGAGAGCGCGGAGAAUA---------GUGUGCGCU-CGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUGGGUU (((((((((((.(.....---------.).))))))-)(((......)))...............................))))......... ( -20.50, z-score = -1.17, R) >consensus GAGAGAGCACGGAGAGAG_UGUAAGUAGUGUGCGCU_CGCGAAGAGGCGCACAAAAAGGAAGUAACUAAAAAUAACAAACAUCUCGUUUGGGUU .....(((.((((((((...........((((((((.(.....).))))))))...((.......))..............)))).)))).))) (-18.50 = -19.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:57 2011