| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,865,503 – 17,865,593 |
| Length | 90 |
| Max. P | 0.938111 |
| Location | 17,865,503 – 17,865,593 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Shannon entropy | 0.45765 |
| G+C content | 0.48185 |
| Mean single sequence MFE | -26.99 |
| Consensus MFE | -16.13 |
| Energy contribution | -17.93 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17865503 90 + 27905053 CUUACUAUCUGUGUGGGUGUUGCAGUUCGGUUUCUUUGUGGCACCCGA-AAACUGACAAACUCAACUGUUGGUAAACCGGUGGCGCCCACA ...........(((((((((..(....((((((.((((.(....))))-).((..(((........)))..)))))))))..))))))))) ( -30.50, z-score = -1.84, R) >droAna3.scaffold_13340 8872583 76 + 23697760 -----UACCUGUGUGGGUGUUGCAGGUC-------UCAAAGUUGAAUAAAAAACAA-AAAUUCGAAAAAC--AAAACCGGAGGCGCCCACA -----......((((((((((...(((.-------......((((((.........-..)))))).....--...)))...)))))))))) ( -21.86, z-score = -2.63, R) >droEre2.scaffold_4820 256525 90 - 10470090 CUUACUAGCUGUGUGGGUGUUGCAGUUCGGUUUCUUUGUGGUCCCCCA-AAACUGACAAACUCAAAUGUUGGAAAACCGGAGGCGCCCACA ...........((((((((((....((((((((.((((.((...))))-)).(..(((........)))..).)))))))))))))))))) ( -28.30, z-score = -1.02, R) >droYak2.chr3R 18703036 91 + 28832112 CUUACUAUAUGUGUGGGUGCUGCAGUUCGGUUUCUUUGUGGUCCCCCCUAAACUGACAAACUCAAAUGUUGGAAAACCGGAGGCGCCCACA ...........((((((((((....((((((((.((((.((....)).))))(..(((........)))..).)))))))))))))))))) ( -29.90, z-score = -2.05, R) >droSec1.super_0 18235243 79 + 21120651 CUUACUAUCUGUGUGGGUGUUGCAGUUCAGUUUCUUUGUGGCACCCUA-AAACUGACAAACUCAA-----------CCGGUGGCGCCCACA ...........(((((((((..(.(((.(((((.((.((.........-..)).)).))))).))-----------)..)..))))))))) ( -24.40, z-score = -1.47, R) >consensus CUUACUAUCUGUGUGGGUGUUGCAGUUCGGUUUCUUUGUGGUACCCCA_AAACUGACAAACUCAAAUGUUGGAAAACCGGAGGCGCCCACA ...........(((((((((..(...(((((((................))))))).............(((....))))..))))))))) (-16.13 = -17.93 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:56 2011