| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,220,279 – 8,220,331 |
| Length | 52 |
| Max. P | 0.915921 |
| Location | 8,220,279 – 8,220,331 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 85.77 |
| Shannon entropy | 0.26098 |
| G+C content | 0.62308 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -15.76 |
| Energy contribution | -16.64 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8220279 52 - 23011544 CAGGCGGUGCACCCGCACCAAGUGGAGCCACAAAUGGCAGUGGAUCCGCCAC ..((((((((....)))))....(((.((((........)))).)))))).. ( -24.70, z-score = -3.02, R) >droSim1.chr2L 8004056 52 - 22036055 CAGGCGGUGCACCCGCACCAAGUGGAGCCACAAAUGGCAGUGGAUCCGCCAC ..((((((((....)))))....(((.((((........)))).)))))).. ( -24.70, z-score = -3.02, R) >droSec1.super_3 3717459 52 - 7220098 CAGGCGGUGCACCCGCACCAAGUGGAGCCACAAAUGGCAGUGGAUCCGCCAC ..((((((((....)))))....(((.((((........)))).)))))).. ( -24.70, z-score = -3.02, R) >droYak2.chr2L 10852874 52 - 22324452 CAGGCGGUGCACCCGCAUCAAGUGGAGCUACAAAUGGCAGCGGAUCCGCCAC ..((((((((..((((.....)))).((((....)))).)))...))))).. ( -20.10, z-score = -1.92, R) >droGri2.scaffold_15252 13382316 52 - 17193109 CAGCUGAAGCAGGCGCAGCAACUGGAGCAACAAAUGUAACUGCAACUGCUAC .......(((((..((((..((((......))...))..))))..))))).. ( -13.40, z-score = -0.13, R) >consensus CAGGCGGUGCACCCGCACCAAGUGGAGCCACAAAUGGCAGUGGAUCCGCCAC ..((((((((....)))))....(((.((((........)))).)))))).. (-15.76 = -16.64 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:33 2011