| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,843,919 – 17,844,017 |
| Length | 98 |
| Max. P | 0.945772 |
| Location | 17,843,919 – 17,844,017 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 89.97 |
| Shannon entropy | 0.15944 |
| G+C content | 0.29093 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -16.73 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17843919 98 - 27905053 AAAUCAAAACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGCUGCUACUUGAAAAUUUUAGU--AGAUUUCGGGA-UUUCCGUUUUAACUGAA .....(((((.....(((((((((((((.....)))))).)))))))..((((((..(....)...))))--))......((.-...)))))))....... ( -19.80, z-score = -1.60, R) >droYak2.chr3R 18677767 98 - 28832112 AAAUCAAAACAUUAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGG---CUACUUGAAAAAGUUAGUAGAGUUUUUGAGAUUUUCCCGUUUAACUAUA ...(((((((.....(((((((((((((.....)))))).))))))).(---((((((....))).))))...).)))))).................... ( -20.00, z-score = -2.25, R) >droSec1.super_0 18214236 94 - 21120651 AAAUGAAAACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGG---CUACUUGAAAAUAUUAGC---GUUUUCGGGA-UUUCCGUUUUAACUAAA ...(((((((.....(((((((((((((.....)))))).))))))).(---(((..(....)...))))---)))))))((.-...))............ ( -22.30, z-score = -3.15, R) >droSim1.chr3R 17666439 95 - 27517382 AAAUCAAAACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGG---CUACUUGAAAAUAUUAGU--AGUUUUCGGGA-UUUCCGUUUUAACUAAA .....(((((.....(((((((((((((.....)))))).)))))))((---..((((((((((......--.))))))))).-)..)))))))....... ( -21.50, z-score = -3.07, R) >consensus AAAUCAAAACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGG___CUACUUGAAAAUAUUAGU__AGUUUUCGGGA_UUUCCGUUUUAACUAAA .....(((((.....(((((((((((((.....)))))).)))))))((......(((((((((.........))))))))).....)))))))....... (-16.73 = -17.35 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:55 2011