| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,824,960 – 17,825,054 |
| Length | 94 |
| Max. P | 0.625959 |
| Location | 17,824,960 – 17,825,054 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.25129 |
| G+C content | 0.53611 |
| Mean single sequence MFE | -10.55 |
| Consensus MFE | -6.96 |
| Energy contribution | -7.56 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17824960 94 - 27905053 GAAUAUAUACCCAGCGACAAUCCCCGCUAACCGCCCACCC------CCCUCCUGCGCCCAAUGCCCCCAUCUAUAAACCGCCGAAAGUGCAUAGAAAAAA ............((((........))))...(((......------.......))).............(((((.....(((....).)))))))..... ( -10.32, z-score = -1.98, R) >droSim1.chr3R 17645571 88 - 27517382 GAAUAUAUACCCAGCGACAAACCCCGCUAACCGCCCACUC------CCCCCUCCUGC------GACCCAUCUAUAAACCGCCGAAAGUGCAUAGAAAAAA ............((((........))))...(((......------.........))------).....(((((.....(((....).)))))))..... ( -10.86, z-score = -3.13, R) >droSec1.super_0 18195290 88 - 21120651 GAAUAUAUACCCAGCGACAAUCCCCGCUAACCGCCCACUC------CCCCCUCCUGC------GACCCAUCUAUAAACCGCCGAAAGUGCAUAGAAAAAA ............((((........))))...(((......------.........))------).....(((((.....(((....).)))))))..... ( -10.86, z-score = -2.85, R) >droYak2.chr3R 18658360 94 - 28832112 GAAUAUAUACCCAGCGACAAUCCCAGCUAACCGCCCCACC------CCCUCCUGCGCCCCAUGCCCCCAUCUAUAAACCGCCGAAAGUGCAUAGAAAAAA ............(((..........)))...(((......------.......))).............(((((.....(((....).)))))))..... ( -7.72, z-score = -0.73, R) >droEre2.scaffold_4820 213345 100 + 10470090 GAAUAUAUACCCAGCGACAAUCCCAGCUAACCACCCCCUCCCUCCACCCCCCUGGGUGCCAUGCCCCCAUCCAUAAACCGCCGAAAGUGCAUAGAAAAAA ............(((..........)))................(((((....))))).....................(((....).)).......... ( -13.00, z-score = -1.35, R) >consensus GAAUAUAUACCCAGCGACAAUCCCCGCUAACCGCCCACUC______CCCCCCUGCGC_C_AUGCCCCCAUCUAUAAACCGCCGAAAGUGCAUAGAAAAAA ............((((........)))).........................................(((((.....(((....).)))))))..... ( -6.96 = -7.56 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:52 2011