| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,823,965 – 17,824,028 |
| Length | 63 |
| Max. P | 0.588079 |
| Location | 17,823,965 – 17,824,028 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 92.86 |
| Shannon entropy | 0.11201 |
| G+C content | 0.46825 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.15 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17823965 63 + 27905053 UCGAGGGGGUUAGGGGAUGUGUAAAACAGGAGCGAUAGGAACUUGGCAAGUCAGAUGUAACCA .......(((((.(.(((.(((....((((..(.....)..))))))).)))...).))))). ( -11.90, z-score = -0.79, R) >droSec1.super_0 18194350 63 + 21120651 UCAAGGGGGUUAGAGGAUGUGUAAAACAGGAGCGAUAGGAACAUGGCAAGUCAGAUGUAACCA .......(((((.(.(((((.....))....((.((......)).))..)))...).))))). ( -10.30, z-score = -0.93, R) >droYak2.chr3R 18657280 63 + 28832112 ACAAGGGGGUUAGAGGAUGUGUAAAACAGGAGCGAUGGGAACAUGGCAAGUCAGAUAUAACCA .......(((((...(((((.....))....((.(((....))).))..))).....))))). ( -14.80, z-score = -3.25, R) >droEre2.scaffold_4820 212222 63 - 10470090 ACAAGGGGGUUACAGGAUGUGUAAAACAGGAGCGAUGGGAACAUGGCAAGUCAGAUAAAACCA ....(((..(((((.....)))))..)....((.(((....))).)).............)). ( -14.10, z-score = -2.57, R) >consensus ACAAGGGGGUUAGAGGAUGUGUAAAACAGGAGCGAUAGGAACAUGGCAAGUCAGAUAUAACCA .......(((((.(.(((((.....))....((.(((....))).))..)))...).))))). (-10.34 = -11.15 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:50 2011