| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,814,328 – 17,814,443 |
| Length | 115 |
| Max. P | 0.914457 |
| Location | 17,814,328 – 17,814,443 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 93.07 |
| Shannon entropy | 0.11190 |
| G+C content | 0.42391 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -23.59 |
| Energy contribution | -23.15 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17814328 115 - 27905053 AAAUUGCCAUACAAAUAUU-AAAAAAAGGAGGGGAACCUAAAUAAAAAAGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGGAUAGAGGACAUUAAAGUUCCAGCUGCCGGUGGA ...(..((...........-.........(((....)))..........((((((.............(((.(...).))).....(.((((......))))).))))))))..). ( -27.70, z-score = -2.07, R) >droEre2.scaffold_4820 202824 115 + 10470090 AAAUAGCUAUACAAAUAUUAAAAAAAAGGAGGGGAACCGAAAUAAAAAAGGCAGCAAGUAAUAUGAGAAUGGCUGGGGCGCGGAUGGAGGACAUUGAAGUUCCAGCUG-CAGCAGC .....(((......................((....))............(((((.(((.((......)).)))(((((...((((.....))))...))))).))))-))))... ( -25.60, z-score = -2.04, R) >droSec1.super_0 18184901 115 - 21120651 AAAUUGCCAUACAAAUAUU-AAAAAAAGGAGGGGAACCUAAAUAAAAAAGGCAGCAAGUAAUACGAGAGUGGCAAGGGCGCGGAUAGAGGACAUUAAAGUUCCAGCUGCCGGUGGC .....(((((.........-.........(((....)))..........((((((..((..(((....)))((....)))).....(.((((......))))).)))))).))))) ( -30.10, z-score = -2.77, R) >droSim1.chr3R 17634259 115 - 27517382 AAAUUGCCAUACAAAUAUU-AAAAAAAGAAGGGGAACCUAAAUAAAAAAGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGGAUAGAGGACAUUAAAGUUCCAGCUGCCGGUGGC .....(((((.........-.........(((....)))..........((((((.............(((.(...).))).....(.((((......))))).)))))).))))) ( -28.60, z-score = -2.44, R) >consensus AAAUUGCCAUACAAAUAUU_AAAAAAAGGAGGGGAACCUAAAUAAAAAAGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGGAUAGAGGACAUUAAAGUUCCAGCUGCCGGUGGC .....(((.....................(((....)))..........((((((..((..(((....)))((....)))).....(.((((......))))).)))))))))... (-23.59 = -23.15 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:48 2011