| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,807,063 – 17,807,166 |
| Length | 103 |
| Max. P | 0.892864 |
| Location | 17,807,063 – 17,807,166 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.03 |
| Shannon entropy | 0.39933 |
| G+C content | 0.36019 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -13.48 |
| Energy contribution | -14.44 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892864 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 17807063 103 + 27905053 -----AAAUGCAUUCGCGCAUGGAAAAUGGAAAA--------UGUGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUUAAGCGACAAC---AUAGCAGAAUGCAUA -----..((((((((((((((............)--------)))))...(-(.((((....(((((((((......)))))))))..))))..))......---......)))))))). ( -27.60, z-score = -2.30, R) >droAna3.scaffold_13340 8812689 99 + 23697760 -----AAAUGCAUUCGCGCAUGGAAAAUG---------------UGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAACUACGCCACCGAAUGCAUA -----..((((((((((((((.....)))---------------)))...(-(....))...(((((((((......)))))))))...(((..(((.......)))))).)))))))). ( -29.50, z-score = -3.13, R) >droEre2.scaffold_4820 195541 110 - 10470090 -----AAAUGCAUUCGCACAUGGAAAAUGGAAAA-UGGAAAAUGUGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAAC---AUCGCAGAAUGCAUA -----..((((((((((((((.....((.....)-).....))))))....-....(((...(((((((((......)))))))))...)))..((((....---.)))).)))))))). ( -31.60, z-score = -3.58, R) >droYak2.chr3R 18640148 111 + 28832112 -----AAAUGCAUUCGCGCAUGGAAAAUGGAAAAAUGGCAAAUGUGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAAC---AUCGCAGAAUGCAUA -----..((((((((((((((.....((......)).....))))))....-....(((...(((((((((......)))))))))...)))..((((....---.)))).)))))))). ( -31.40, z-score = -2.47, R) >droSec1.super_0 18177700 103 + 21120651 -----AAAUGCAUUCGCGCAUGGAAAAUGAAAAA--------UGUGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAAC---AUCGCAGAAUGCAUA -----..((((((((((((((............)--------)))))....-....(((...(((((((((......)))))))))...)))..((((....---.)))).)))))))). ( -30.70, z-score = -3.06, R) >droSim1.chr3R 17617239 103 + 27517382 -----AAAUGCAUUCGCGCAUGGAAAAUGGAAAA--------UGUGCUAAG-CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAAC---AUCGCAGAAUGCAUA -----..((((((((((((((............)--------)))))....-....(((...(((((((((......)))))))))...)))..((((....---.)))).)))))))). ( -30.70, z-score = -2.94, R) >droVir3.scaffold_13047 10540254 94 - 19223366 CUUUGCAAUGCAUUCGCGU---GAAAAUG---------------UGCUAAA-UAAACGCAAAUGAAUUU-GCACAUUC-AGAUUUAAACACGAAGUGACAAC-----AAGAAAAUACUUA ...(((((..((((.((((---.......---------------.......-...)))).))))...))-))).....-.........(((...))).....-----............. ( -13.03, z-score = 0.80, R) >droMoj3.scaffold_6540 32017833 87 + 34148556 --UUUCAAUACAUUCGCUUA--GAAAAUG---------------UGCUAAAACAAAUGCAAAUGAAUUU-GCACAUUU-CGAUUUAAACACGAAAUGACAAA-----CACUCA------- --..........(((.....--)))...(---------------((..........((((((....)))-)))(((((-((.........))))))).....-----)))...------- ( -12.80, z-score = -1.27, R) >consensus _____AAAUGCAUUCGCGCAUGGAAAAUGGAAAA________UGUGCUAAG_CAAACGCAAAUGAAUUUUGCAAAUUCGAAAUUCAAACGUGAAGCGACAAC___AUCGCAGAAUGCAUA .......((((((((.(((.........................(((..........)))..(((((((((......)))))))))...)))..(((..........))).)))))))). (-13.48 = -14.44 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:45 2011