| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,789,095 – 17,789,210 |
| Length | 115 |
| Max. P | 0.992051 |
| Location | 17,789,095 – 17,789,210 |
|---|---|
| Length | 115 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 68.72 |
| Shannon entropy | 0.56936 |
| G+C content | 0.37633 |
| Mean single sequence MFE | -31.21 |
| Consensus MFE | -12.11 |
| Energy contribution | -13.43 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.992051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17789095 115 - 27905053 AAUCCCUGUUGGGGUUUGUUUUCUGCUGCUGGAUAACUUUUUCGCAAGGAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUAUAUUCAGGUAGAUUGCAUUAUC ((((((....))))))(((..(((((..(((((((...(((((....)))))....((((((((((.....))).)))))))...........))))))))))))..)))..... ( -34.80, z-score = -3.10, R) >droPer1.super_0 475008 93 - 11822988 AAGCUCUGUGGAGGCAAAAGUUUCCGCACAAGA-AAGACAUGAACGGGCACAAAUACUUGUUGAAGGCUGUAUGCCAGAGGAUUUUAUUAGUGA--------------------- ...((((((((((((....))))))))......-......(.((((((........)))))).).(((.....)))))))..............--------------------- ( -23.00, z-score = -0.74, R) >dp4.chr2 6648729 93 - 30794189 AAGCUCUGUGGAGGCAAAAGUUUCCGCACAAGA-AAGACAUGAACGGGUACAAAUACUUGUUGAAGGCUGUAUGCCAGAGGAUUUUAUUAGUGA--------------------- ...((((((((((((....))))))))......-......(.((((((((....)))))))).).(((.....)))))))..............--------------------- ( -25.50, z-score = -1.88, R) >droEre2.scaffold_4820 177413 112 + 10470090 AAUCCCUGUUGGGGUUUGUUUU---CUGCUGGAUAACUUUUUCGCAAGAAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUAUAUUCAGGUAGAGUCCAUUAUC ((((((....))))))((..((---((((((((((...(((((....)))))....((((((((((.....))).)))))))...........)))))).))))))..))..... ( -33.40, z-score = -3.46, R) >droYak2.chr3R 18621647 112 - 28832112 AAUCCCUGUUGGGGUUUGUUUU---CUGCUGGAUAACUUUUUCGCAAGAAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUGUAUUCAGAUAGAUUGCAUUAUC ((((((....))))))(((..(---((((((((((...(((((....)))))....((((((((((.....))).)))))))...........))))))).))))..)))..... ( -34.20, z-score = -3.79, R) >droSec1.super_0 18159568 112 - 21120651 AAUCCCUGUUGGGGUUUGUUUU---CUGCUGGAUAACUUUUUCGCAAGGAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUAUAUUCAGGUAGAUUGCAUUAUC ((((((....))))))(((..(---((((((((((...(((((....)))))....((((((((((.....))).)))))))...........)))))).)))))..)))..... ( -33.80, z-score = -3.24, R) >droSim1.chr3R 17599992 112 - 27517382 AAUCCCUGUUGGGGUUUGUUUU---CUGCUGGAUAACUUUUUCGCAAGGAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUAUAUUCAGGUAGAUUGCAUUAUC ((((((....))))))(((..(---((((((((((...(((((....)))))....((((((((((.....))).)))))))...........)))))).)))))..)))..... ( -33.80, z-score = -3.24, R) >consensus AAUCCCUGUUGGGGUUUGUUUU___CUGCUGGAUAACUUUUUCGCAAGGAAAUAUAAGCUUAGCAAAAUAUUUGCCUGAGCUCUUUAUUGCUAUAUUCAGGUAGAUUGCAUUAUC ...(((....)))...............(((((((...(((((....))))).....((((((((((...)))).))))))............)))))))............... (-12.11 = -13.43 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:45 2011