| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,764,834 – 17,764,941 |
| Length | 107 |
| Max. P | 0.647427 |
| Location | 17,764,834 – 17,764,941 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.31054 |
| G+C content | 0.36452 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -19.71 |
| Energy contribution | -20.13 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17764834 107 - 27905053 ------AUAUAUAUCUUUUUUGUUGCAAUUUUAUUCCUCCGUUUAUUUUC------UUUUUUUUUUGGUGAGCGAGCCUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ------............((((((((((((((.......((((((((...------..........)))))))).....(((((...))))))))))))).))))))............ ( -22.52, z-score = -0.86, R) >droSim1.chr3R 17575941 113 - 27517382 ------AUAUAUAUCUUUUUUGUUGCAAUUUUAUUCCUCCGUUUAUUUUCUUUCUUUUUUUUUUUUGGUGAGCGAGCCUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ------............((((((((((((((.......((((((((...................)))))))).....(((((...))))))))))))).))))))............ ( -22.11, z-score = -0.74, R) >droSec1.super_0 18135392 108 - 21120651 ------AUAUAUAUCUUUUUUGUUGCAAUUUUAUUCCUCCGUUUAUUUUC-----UUUUUUUUUUUGGUGAGCGAGCCUGGCGGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ------............((((((((((((((.......((((((((...-----...........)))))))).....(((((...))))))))))))).))))))............ ( -21.74, z-score = -0.24, R) >droYak2.chr3R 18595208 108 - 28832112 AUAUAUGUAUAUAUCUUUUUUGUUGCAAUUUUAUUCCUUCGUUUUUUGU-----------UUUUUUGGAGAGCGAGGAUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ...(((((...........(((((((((((((..((((.((((((..(.-----------.....)..)))))))))).(((((...))))))))))))).))))))))))........ ( -29.70, z-score = -2.79, R) >droEre2.scaffold_4820 150145 105 + 10470090 ------AUAUACAUC-UUUUUGUUGCAAUUUUAUUUCUCAGUUUUUUCU-------UGUAUUUUUUGGAGAGCGAGCCUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ------.........-..((((((((((((((........((((.((((-------(..........))))).))))..(((((...))))))))))))).))))))............ ( -21.30, z-score = -0.03, R) >droAna3.scaffold_13340 8771585 88 - 23697760 ---------------AUUUUUGUUGCAAUUUCAUUCCUC---UUAUUUU------UUGUAUAUU-------GUGAGCCUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ---------------...((((((((((((((......(---((((..(------......)..-------)))))...(((((...))))))))))))).))))))............ ( -20.90, z-score = -1.47, R) >consensus ______AUAUAUAUCUUUUUUGUUGCAAUUUUAUUCCUCCGUUUAUUUU_______UUUUUUUUUUGGUGAGCGAGCCUGGCAGUGUCUGCCGAAAUUGCAAGCGGGCAUAAAUUAACC ..................((((((((((((((....(((.(((((((...................))))))))))...(((((...))))))))))))).))))))............ (-19.71 = -20.13 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:42 2011