| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,760,764 – 17,760,849 |
| Length | 85 |
| Max. P | 0.928468 |
| Location | 17,760,764 – 17,760,849 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 70.19 |
| Shannon entropy | 0.52776 |
| G+C content | 0.44619 |
| Mean single sequence MFE | -19.38 |
| Consensus MFE | -9.43 |
| Energy contribution | -10.15 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17760764 85 + 27905053 -------------CUUCAAAAUCCCUGGACUCUUUUCAUUAGGCGUCAGAAUGGACGGAAAUACCUCAAUUCUGGCGCCU-CGCUUCCUGACAUCAAAA -------------..(((...((....))...........((((((((((((.((.((.....)))).))))))))))))-.......)))........ ( -22.50, z-score = -2.38, R) >droSim1.chr3R 17571536 85 + 27517382 -------------CUUCUCAAUCCCUGCACUCGUUUCAUUAGGCGUUUGAAUGUACGGAAAUACCUCAAUUCUGGCGCCU-CGCUUCCUGACAUCAAAA -------------...................(((.....((((((..((((....((.....))...))))..))))))-........)))....... ( -14.92, z-score = -0.62, R) >droSec1.super_0 18131434 85 + 21120651 -------------CUUCACAAUUCCUGGACUCUUUUCAUUAGGCGUCUGAAUGUACGGAAAUACCUCAAUUCUGGCGCCU-CGCUUCCUGACAUGAAAA -------------.((((.......((((.....))))..(((((((.((((....((.....))...)))).)))))))-............)))).. ( -16.70, z-score = -0.88, R) >droYak2.chr3R 18590835 85 + 28832112 -------------CUUCUCAAUCCCUGGACUCUUUGCAUUAAGCGCCAGAAUGCACGGAAAUACCUGAAUUCUGGCGCCU-CGCUUCCUGACAUCAAAA -------------.............(((......((.....((((((((((.((.((.....)))).))))))))))..-.)).)))........... ( -21.50, z-score = -2.40, R) >droEre2.scaffold_4820 146251 75 - 10470090 -----------------------CCUGGUCUCUUUUCAUUAAGCGCCAGAAUGCACGGAAAUACCUCCAUUCUGGCGCCU-CGCUUCCUGACAUCAAAA -----------------------..((((.((..........(((((((((((...((.....))..)))))))))))..-........)).))))... ( -23.25, z-score = -3.96, R) >droGri2.scaffold_15074 893355 98 + 7742996 CUCAAAUAAGGAAUAACUUUUUCUAUGCACCCUUUGUGGAAGG-GCAUGGAAAUAUCAUAGAAACUCUACUUUGACAUUUGCACUAAUUGAAAUGAGAA ((((...............(((((((((..(((((...)))))-)))))))))..(((.((........)).)))..................)))).. ( -17.40, z-score = -0.76, R) >consensus _____________CUUCUCAAUCCCUGGACUCUUUUCAUUAGGCGCCAGAAUGUACGGAAAUACCUCAAUUCUGGCGCCU_CGCUUCCUGACAUCAAAA ........................................(((((((.((((....((.....))...)))).)))))))................... ( -9.43 = -10.15 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:41 2011