Locus 10954

Sequence ID dm3.chr3R
Location 17,749,313 – 17,749,377
Length 64
Max. P 0.823445
window15056

overview

Window 6

Location 17,749,313 – 17,749,377
Length 64
Sequences 3
Columns 64
Reading direction reverse
Mean pairwise identity 78.95
Shannon entropy 0.29345
G+C content 0.27609
Mean single sequence MFE -7.17
Consensus MFE -7.39
Energy contribution -6.73
Covariance contribution -0.66
Combinations/Pair 1.21
Mean z-score -0.64
Structure conservation index 1.03
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.81
SVM RNA-class probability 0.823445
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 17749313 64 - 27905053
AUUCUGUGUACUCUGUGUUUGAUGUAAUUCCAUAGCAUAUAUUUUGUAUAUGUCUUAAGUUAAU
.....((((((...((((.((.(((......))).)).))))...))))))............. (  -7.00, z-score =  -0.11, R)
>droSec1.super_0 18120299 62 - 21120651
AUUCUGUGUACUCUAUGCUUGAAUUAAUUCCAUAGCAUGUAUUUUGUAUAUGUUUUAAGUUG--
.....((((((..((((((.(((....)))...))))))......))))))...........-- (  -8.40, z-score =  -0.97, R)
>droSim1.chr3R 17559813 52 - 27517382
AUUCUGUGUACUCUAUGUUUGAUGUUAUUCCAUAGCAUGUUUUUUGUAUAUG------------
.....((((((..((((((.((......))...))))))......)))))).------------ (  -6.10, z-score =  -0.85, R)
>consensus
AUUCUGUGUACUCUAUGUUUGAUGUAAUUCCAUAGCAUGUAUUUUGUAUAUGU_UUAAGUU___
.....((((((..((((((.((......))...))))))......))))))............. ( -7.39 =  -6.73 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:40 2011