Locus 10952

Sequence ID dm3.chr3R
Location 17,742,616 – 17,742,714
Length 98
Max. P 0.773202
window15054

overview

Window 4

Location 17,742,616 – 17,742,714
Length 98
Sequences 7
Columns 116
Reading direction reverse
Mean pairwise identity 75.03
Shannon entropy 0.45194
G+C content 0.36322
Mean single sequence MFE -18.45
Consensus MFE -8.21
Energy contribution -9.13
Covariance contribution 0.92
Combinations/Pair 1.35
Mean z-score -2.09
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.773202
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 17742616 98 - 27905053
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUCAGGUUU-----------------UUUUUUGUUGCCUCUGCCUCUACUGUUGC-GGCAAUUUAAAUGCCUAAACAAU
...(((((((.(((((..........((((((........((((..-----------------(.....)..))))...........)))))-))))))..)))))))........ ( -17.31, z-score =  -1.02, R)
>droSim1.chrU 6442958 101 + 15797150
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUUCAGUUUUUU--------------UUUUUUGUUGCCUCUGCCGCUACUGUUGC-GGCAAUUUAAAUGCCUAAACAAU
...(((((((.................(((((.................--------------......)))))...((((((.......))-))))....)))))))........ ( -20.30, z-score =  -2.15, R)
>droSec1.super_0 18113694 99 - 21120651
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUUCAGUUUU----------------UUUUUUGUUGCCUCUGCUGCUACUGUUGC-GGCAAUUUAAAUGCCUAAACAAU
...(((((((.................(((((...............----------------......)))))...((((((.......))-))))....)))))))........ ( -18.20, z-score =  -1.35, R)
>droYak2.chr3R 18571599 116 - 28832112
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUUGUAAUUUUUUUUUUUUUUAUUCCAUUUUUGUUGCUUCUGCCGCUACUGUUGUAGGCAAUUUAAAUGCCUAAACAAU
...(((((((.(((((...........(((((........((((............)))).........)))))..((((.((....)).)))))))))..)))))))........ ( -19.53, z-score =  -1.98, R)
>droEre2.scaffold_4820 128195 92 + 10470090
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUU-----------------------UUUUGUGUUGCUUCUGCCGCUACUGUUGC-GGCAAUUUAAAUGCCUAAACAAU
...(((((((.................(((((.(......-----------------------....).)))))...((((((.......))-))))....)))))))........ ( -22.30, z-score =  -3.21, R)
>droAna3.scaffold_13340 8749621 86 - 23697760
GCUGGCAUUUUAUUGUUUUCGUUUCGCG-AACUCUCUGC------------------------AUUUUUACAACGCC----ACCGUUGUUGC-UGUAAUUUAAAUGCCUAAACAAU
...(((((((.((((..((((.....))-))......((------------------------(.....((((((..----..)))))))))-..))))..)))))))........ ( -18.00, z-score =  -1.93, R)
>dp4.chr2 6600049 74 - 30794189
GCUGGCAUUUUAUUGCUU-------UCGUAAUUCCCUUU------------------------UUUUUCGUUGCGUUU-------CUUUUGU----AAUUUAAAUGCCUAAACAAU
...(((((((.(((((..-------.((((((.......------------------------......))))))...-------.....))----)))..)))))))........ ( -13.52, z-score =  -3.03, R)
>consensus
GCUGGCAUUUUAUUGUUUUCGCUUCUCGUAACCCUUUUUU____UU_________________UUUUUUGUUGCCUCUGCCGCUACUGUUGC_GGCAAUUUAAAUGCCUAAACAAU
...(((((((....(((............))).....................................((((((...((.((....)).)).))))))..)))))))........ ( -8.21 =  -9.13 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:39 2011