| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,731,685 – 17,731,779 |
| Length | 94 |
| Max. P | 0.738073 |
| Location | 17,731,685 – 17,731,779 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.68 |
| Shannon entropy | 0.09564 |
| G+C content | 0.58612 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -24.46 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17731685 94 + 27905053 CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCUCAGCCUCAACUGCAGCCUCAUCCCCAUAUUGCCGUGGCCAAG ......((((((((........((..((((((....((((((.........)))))).....))))))..))..........)))).))))... ( -31.97, z-score = -2.74, R) >droYak2.chr3R 18560016 94 + 28832112 CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCUCAUCCUCAUCUGCAGCCUCAUCCCCACAUUGCCGUGGCCAAG ......((((((((........((..((((((....((.(((.........))).)).....))))))..))..........)))).))))... ( -25.37, z-score = -1.02, R) >droEre2.scaffold_4820 117026 94 - 10470090 CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCUCAUCCUCAACUGCAGCCUCAUCCCCACACCGCCAUGGCCAAG ......((((((((........((..((((((....((.(((.........))).)).....))))))..))..........)))).))))... ( -25.37, z-score = -1.43, R) >droSec1.super_0 18102765 88 + 21120651 CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCU------CAACUGCAGCCUCAUCCCCAUAUUGCCGUGGCCAAG ......((((((((........((..((((((....((.((.....)).)).------....))))))..))..........)))).))))... ( -25.57, z-score = -1.08, R) >droSim1.chr3R 17542796 94 + 27517382 CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCUCAGCCUCAACUGCAGCCUCAUCCCCAUAUUGCCGUGGCCAAG ......((((((((........((..((((((....((((((.........)))))).....))))))..))..........)))).))))... ( -31.97, z-score = -2.74, R) >consensus CAUCGCGGCCUGGCUAAAGCGUUGUAGCUGUACACCGGCUGAUCCUCAUCCUCAGCCUCAACUGCAGCCUCAUCCCCAUAUUGCCGUGGCCAAG ......((((((((...(((......))).......(((((.......................))))).............)))).))))... (-24.46 = -24.30 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:38 2011