| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,196,936 – 8,196,990 |
| Length | 54 |
| Max. P | 0.837981 |
| Location | 8,196,936 – 8,196,990 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 87.22 |
| Shannon entropy | 0.23343 |
| G+C content | 0.37547 |
| Mean single sequence MFE | -8.70 |
| Consensus MFE | -6.12 |
| Energy contribution | -6.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8196936 54 - 23011544 UUUAAAUCACCCGCUCUGCCUUUAACGAUUGGUCUUCAACAAUCGAUUUUAGCU .................((......((((((........))))))......)). ( -7.60, z-score = -1.45, R) >droSim1.chr2L 7980007 54 - 22036055 UUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCCACAACAAUCGAUUUUAGCU ............(((..(((.....((((((........)))))))))..))). ( -9.00, z-score = -2.21, R) >droSec1.super_3 3693898 54 - 7220098 UUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCUACAACAAUCGAUUUUAGCU ............(((..(((.....((((((........)))))))))..))). ( -9.00, z-score = -2.29, R) >droYak2.chr2L 10828993 53 - 22324452 UUUAAAUUACCCGCUCAGCUUUUAUCGAUUGGUCUCC-ACAAUCGAUUUUAGCU ................((((...((((((((......-.))))))))...)))) ( -14.30, z-score = -4.79, R) >droEre2.scaffold_4929 17102988 54 - 26641161 UUCAAAUUACCCGCUCUGUUUUUAACGAUUGCUCUUCCAGAAUCGAUAUUACCC .........................(((((.((.....)))))))......... ( -3.60, z-score = -0.43, R) >consensus UUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCUACAACAAUCGAUUUUAGCU .........................((((((........))))))......... ( -6.12 = -6.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:31 2011