| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,718,931 – 17,719,047 |
| Length | 116 |
| Max. P | 0.657902 |
| Location | 17,718,931 – 17,719,047 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 62.87 |
| Shannon entropy | 0.67888 |
| G+C content | 0.36319 |
| Mean single sequence MFE | -26.26 |
| Consensus MFE | -8.24 |
| Energy contribution | -8.12 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.657902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17718931 116 - 27905053 GUGAACUUUCGUUGCCAUGCUGGUUGGCUUCUAUAUAUAUAAUGCAAUAGUAUUCUCUUACUGUUGUGCGUAAUGGAAUUGAAGACAUAAUCGUGAAAAAAUUUUCGCGAUAAGAC ......((((((((((..(((....)))...............(((((((((......)))))))))).)))))))))...........(((((((((....)))))))))..... ( -28.30, z-score = -2.15, R) >droSim1.chr3R 17530062 109 - 27517382 GGGAAAUUCCGUUGCCAUGCUGGUUGGCUUCUACAUA-------CAAUAUUAUUCUCUUGCUGUUGUGCGUAAUGGAAUUAAACCCAUAAUCGUGAAAAAAUUUUCGAGAUUAGAC (((.(((((((((((((.......))))....((.((-------(((((.((......)).))))))).)))))))))))...))).(((((.(((((....))))).)))))... ( -28.80, z-score = -2.71, R) >droSec1.super_0 18090252 97 - 21120651 GGGAAGUUUCGUUGCCAUGCUGGUUGGCUUCUACAUA-------------------UUUACUGUUGUGCGUAAUGGAAUUAAACCCAUAAUCGUGAACAAAUUUUCGAGAUUAGAC (((.(((((((((((...(((....))).....((((-------------------........)))).)))))))))))...))).(((((.((((......)))).)))))... ( -21.70, z-score = -0.71, R) >droYak2.chr3R 18546573 112 - 28832112 GGGAAGUUUCGUUGCCAUGCUGCUUGGCAUUUAUAUGC----UGCAAGAGCAUGCUUUUAGAGUUGUGCGUAAUGGAAUUAAACCCAUAAUCGCAAAGAAGUUUGCGCGAUAAGAC (((.(((((((((((((((((.((((((((....))))----..))))))))))........(.....))))))))))))...))).....((((((....))))))......... ( -31.80, z-score = -1.06, R) >droAna3.scaffold_13340 8718563 109 - 23697760 AGGACAUUUGGCAGGC-CAUAGUCUACUUUUUAUGAAAAU-GGAUUAUAACUUAAGAUUACUCUAAAAGAU-AUACCUUUUAAAGUUUAGUUAUUCAAUAUUUUCCGAAUUA---- .((((...(((....)-))..)))).........((((((-(....((((((.......(((.((((((..-....)))))).)))..))))))....))))))).......---- ( -20.70, z-score = -1.61, R) >consensus GGGAAAUUUCGUUGCCAUGCUGGUUGGCUUCUAUAUA_______CAAUAGCAUUCUCUUACUGUUGUGCGUAAUGGAAUUAAACCCAUAAUCGUGAAAAAAUUUUCGAGAUAAGAC .((((((((....((((.......))))......................................((((..((((........))))...))))...)))))))).......... ( -8.24 = -8.12 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:35 2011