| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,718,234 – 17,718,327 |
| Length | 93 |
| Max. P | 0.905897 |
| Location | 17,718,234 – 17,718,327 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 85.27 |
| Shannon entropy | 0.25333 |
| G+C content | 0.50346 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.78 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17718234 93 - 27905053 CGGUGGAGCUG-CAUGGUGGUACAAAAAAAA------AAAAUGGGGAGACCCGGGUAUCCGAUGCGAUGCGAAGUGAUGUGAUGUACAUGGGAGCAUAGA .........((-(((.(.(((((........------....((((....)))).)))))).)))))((((....(.(((((...))))).)..))))... ( -24.02, z-score = -1.77, R) >droSim1.chr3R 17529349 90 - 27517382 CGGAGGAGCUU-CAUGGUGGUACACAAAAAA---------AUGGGGAGACCCGGGGAUCCGAUGCGAUGCAAAGUGAUGUGAUGUACAUGGGAGCAUAGA .......((((-(......(((((((.....---------.((((....))))...((((..(((...)))..).))).)).)))))...)))))..... ( -23.50, z-score = -1.24, R) >droSec1.super_0 18089535 92 - 21120651 CGGAGGAGCUUCCAUGGUGGUACACAAAAAA--------CAUGGGGAGACCCGGGGAUCCGAUGCAAUGCGAAGUGAUGUGAUGUACAUGGGAGCAUAGA .......(((((((((....((((((.....--------((((((....)))((....))......))).....)).)))).....)))))))))..... ( -29.20, z-score = -2.22, R) >droYak2.chr3R 18545806 94 - 28832112 UGGAGGAGUCA-CAUGGUGGUACAAAAAAAAAAAGACGAAAUGGGGAGACCCGGGGUUCCGAUGCGAU-----GUGAUGUGAUGUACAUGGGAGCAUAGA .......((((-(((.((........................(((....)))((....))...)).))-----)))))...((((........))))... ( -21.30, z-score = -1.20, R) >droEre2.scaffold_4820 103659 90 + 10470090 CGGAGGAGCUC-CAUGGAGGUACAAAAAAGA----AAAAAAGGGGGAGACCCGGGGAUCCGAUGCGAU-----GUGAUGUGAUGUACAUGGGAGCAUAGA ((((....(((-(.((......)).......----.......(((....))))))).))))((((.((-----(((........)))))....))))... ( -24.90, z-score = -2.71, R) >consensus CGGAGGAGCUU_CAUGGUGGUACAAAAAAAA_______AAAUGGGGAGACCCGGGGAUCCGAUGCGAUGC_AAGUGAUGUGAUGUACAUGGGAGCAUAGA .......((((.((((....((((..................(((....)))((....)).................)))).....)))).))))..... (-20.42 = -20.78 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:34 2011