| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,703,802 – 17,703,898 |
| Length | 96 |
| Max. P | 0.751890 |
| Location | 17,703,802 – 17,703,898 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.81 |
| Shannon entropy | 0.27515 |
| G+C content | 0.36198 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.33 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17703802 96 - 27905053 AUGCCCUGUAAUGAAUCCCGAAAUGCAUAUGGGAAAGUCCUCAUUCGAGUUUAAUCAAACUCCCAAAAGACCGCAUUUAUAUCCUUAAAUUCUACA ....................((((((..(((((......)))))..((((((....))))))..........)))))).................. ( -13.40, z-score = -0.49, R) >droSim1.chr3R 17513348 96 - 27517382 AUGCCCUGUCAUGAAUCAAAAAAUUCAUAUGGGUAAGUCCUUUUACGAGUUUAAGCAAACUCCGUAAAGGCCGCAUUUAUAUCUUUAAAAUCUACA .(((((....((((((......))))))..))))).((.(((((((((((((....))))).))))))))..))...................... ( -21.00, z-score = -2.96, R) >droSec1.super_0 18075262 96 - 21120651 UUGCCCUGUCAUGAAUCGAAAAAUUCAUAUGGGUAAGUCCUUUUACGAGUUUAAGCAAACUCCGUAAAGGCCGCAUUUAUAUCUUUAAAAUCUACA ((((((....((((((......))))))..))))))((.(((((((((((((....))))).))))))))..))...................... ( -21.60, z-score = -2.72, R) >droEre2.scaffold_4820 87326 96 + 10470090 AUGUCCUGUAAUGAAUCGCAAAAUUCAUACUGGAAUGUCCUUUUUCGAGUUUAAGUACACUCCUAAGAGACAGCUCUUAUGUCCCUAAAUUCUGCA ...(((.(((.(((((......)))))))).)))............(((((((.(.(((....((((((....))))))))).).))))))).... ( -18.90, z-score = -1.76, R) >consensus AUGCCCUGUAAUGAAUCGAAAAAUUCAUAUGGGAAAGUCCUUUUACGAGUUUAAGCAAACUCCGAAAAGACCGCAUUUAUAUCCUUAAAAUCUACA ..(((((((.((((((......)))))))))))...(((..(((((((((((....))))).))))))))).))...................... (-12.82 = -13.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:34 2011