| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,686,900 – 17,686,966 |
| Length | 66 |
| Max. P | 0.579743 |
| Location | 17,686,900 – 17,686,966 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 87.79 |
| Shannon entropy | 0.16814 |
| G+C content | 0.31263 |
| Mean single sequence MFE | -9.30 |
| Consensus MFE | -8.64 |
| Energy contribution | -8.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17686900 66 - 27905053 -----CUUUCUAAAGAUUGCACAAAAUCGUAUGUAUAUAGAAAGCAAAAAGAAGCACACCUCUAUGUAUCU -----.........((((......))))....(((((((((..((........)).....))))))))).. ( -9.00, z-score = -1.10, R) >droSec1.super_0 18058404 71 - 21120651 AAAGUGAUUCUAAAGAUUGCACAAAAUCUUAUGUAUAUAGAAAGUAAAAUGAAGCAAACCUCUGUGUAUCU ............((((((......))))))..(((((((((...................))))))))).. ( -9.01, z-score = -0.67, R) >droSim1.chr3R 17496313 71 - 27517382 AAAGUGAUUCUAAAGAUUGCCCAAAAUCGUAUGUAUAUAGAAAGCAAAAAGAAGCACACCUCUGUGUAUCU ...((..(((((..((((......)))).........))))).))....(((.(((((....))))).))) ( -9.90, z-score = -1.30, R) >consensus AAAGUGAUUCUAAAGAUUGCACAAAAUCGUAUGUAUAUAGAAAGCAAAAAGAAGCACACCUCUGUGUAUCU ..............((((......))))....(((((((((..((........)).....))))))))).. ( -8.64 = -8.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:33 2011