| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,679,371 – 17,679,472 |
| Length | 101 |
| Max. P | 0.508255 |
| Location | 17,679,371 – 17,679,472 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 67.95 |
| Shannon entropy | 0.63521 |
| G+C content | 0.49695 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -14.05 |
| Energy contribution | -15.61 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17679371 101 - 27905053 UCGUCGUGAAGGUCACACACACCAACGAACGCAAUUCGCGUAAGUACAGCAGCGC-CAAAUGUUGUGUUUUGUUGUACUGUGU---------GGCAGGUCC-AAAAACGGGU---- ((((...((..(((((((..........((((.....)))).(((((((((((((-........))))..)))))))))))))---------)))...)).-....))))..---- ( -31.50, z-score = -0.81, R) >droSim1.chr3R 17488311 109 - 27517382 UCGUCGUGAAGGUCACGCACACCAACGAACGCAAUUCGCGUAAGUACAGCAGCGC-CAAAUGUUGUGUUUUGUUGUACUGUGUAC-UUUUGCGGCAGGUCCGAAAAACGGA----- ..((((..(((((.((((..........((((.....)))).(((((((((((((-........))))..)))))))))))))))-)))..))))...((((.....))))----- ( -39.90, z-score = -2.16, R) >droSec1.super_0 18050917 109 - 21120651 UUGUCGUGAAGGUCACGCACACCAACGAACGCAAUUCGCGUAAGUACAGCAGCGC-CAAAUGUUGUGUUUUGUUGUACUGUGUAC-UUUUGCGGCAGGUCCGAAAAACGGA----- ((((((..(((((.((((..........((((.....)))).(((((((((((((-........))))..)))))))))))))))-)))..)))))).((((.....))))----- ( -40.90, z-score = -2.49, R) >droYak2.chr3R 18504768 110 - 28832112 UCGUCGUGAAGGUCACGCACACCAUCGAGCGCAAUUCGCGUAAGUACAGCAGCGC-CAAAUGUUGUGUUUUGUUGUGCUGUGUAC-UUUUGUGGCAGGUCCGAAAAACGCGU---- ..((((..(((((((((((((.((..(((((((((..((((..........))))-.....))))))))))).))))).))).))-)))..)))).................---- ( -35.50, z-score = -0.39, R) >droEre2.scaffold_4820 61960 104 + 10470090 UCGUCGUGAAGGUCACGCACACCAUCGAGCGCAAAUCGCGUAAGUACAGCAGUGC-CAAAUGUUGUGCUUUGUUGUGCUGUGUAG-UUUUGUGGCAGGUCCGAAAA---------- ..((((..(((.(((((((((.((....((((.....))))((((((((((....-....)))))))))))).))))).))).).-)))..))))...........---------- ( -35.80, z-score = -1.72, R) >droAna3.scaffold_13340 8676572 116 - 23697760 UCGUCGUGAAGGUCACCCAAACACACAAGCUAUUCUCAUACAACUUGCUUGGUCUGUGGAUGCUCCUUUUUGGAGAUCAGCUGGCAGAAUACAGCUGGUUUGGACAUUUUAAAGAU ..(((..(((((.((.(((...((.(((((................)))))))...))).))..)))))....((((((((((........)))))))))).)))........... ( -33.09, z-score = -1.37, R) >droGri2.scaffold_14906 1542517 94 - 14172833 UCGUCUUGAAGGUCACACA----------CUCGUUAUGCGUAAGUACAGCAGCGU-UUGCCUCUGCGUCUGCGUGCGCGACUU-------GUGGCAGGUCCAACUAACAGGC---- ..(.((((.(((((.(.((----------(......(((....)))..(((((((-........))).))))))).).)))))-------....)))).)............---- ( -25.70, z-score = 1.37, R) >consensus UCGUCGUGAAGGUCACGCACACCAACGAACGCAAUUCGCGUAAGUACAGCAGCGC_CAAAUGUUGUGUUUUGUUGUACUGUGUAC_UUUUGCGGCAGGUCCGAAAAACGGA_____ ..((((((.....)))((((........((((.....)))).((((((((((.((.(((...))).)).)))))))))))))).........)))..................... (-14.05 = -15.61 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:32 2011