| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,677,770 – 17,677,861 |
| Length | 91 |
| Max. P | 0.593618 |
| Location | 17,677,770 – 17,677,861 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.53 |
| Shannon entropy | 0.50814 |
| G+C content | 0.43829 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.18 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17677770 91 - 27905053 AUGACAUUUAGUAUAUCGGCCAACG-AUGAUCAGGUAUAGGUUUACUUUACUGU---------ACA-----------------CUUGCACAAGUGUGCAUAA-UUCCAGGGCGAUAAGA .............(((((.((....-.......((((.((.....)).))))((---------(((-----------------(((....))))))))....-.....)).)))))... ( -24.30, z-score = -2.04, R) >droSim1.chr3R 17486625 101 - 27517382 AUGACAUUUAGUAUAUCGGCCAGCCGAUGAUCAGGUAUAGGUUUACUUUACUGUACUCCCAUGG-----------------GGCUUGCACAAGUGUGCAUAA-UUCCAGGGCGAUAAGA .............((((((....))))))(((.(((((((..........)))))))(((.(((-----------------((..(((((....)))))...-)))))))).))).... ( -30.80, z-score = -1.58, R) >droSec1.super_0 18049249 101 - 21120651 AUGACAUUUAGUAUAUCGGCCAGCCGAUGAUCAGGUAUAGGUUUACUUUACUGUAUUCCCAUGG-----------------GGCUUGCACAAGUGUGCAUAA-UUCCAGGGCGAUAAGA ........(((((((((((....))))))...(((((......))))))))))(((((((.(((-----------------((..(((((....)))))...-)))))))).))))... ( -29.20, z-score = -1.26, R) >droYak2.chr3R 18503218 112 - 28832112 AUGACAUUUAGUAUAUCGGCCAGCC---GACCAGGUACAGGUUUACUGUACUCUC---UGAGUACAGCUCUACUAUCAUGGGGCUUGCACAAGUGUGCAUAA-UUCCACGGCGAUAAGA .............(((((.((((((---..(((((((..((....((((((((..---.))))))))..))..)))).)))))))(((((....)))))...-......)))))))... ( -33.60, z-score = -1.41, R) >droEre2.scaffold_4820 60342 118 + 10470090 AUGACAUUUAGUAUAUCGGCCAGCCAAUGACCAGGCAUAGGUUUAGUGUACUGUCAAGCAACGGCAGCUCUACUCUC-UAGGGCUUGCACAAGUGUGCAUAAUUUCCAGGGCGAUAAGA .............(((((.((.(((........)))...((.((((..(((((((((((....)).((((((.....-))))))))).)).))))..).)))...)).)).)))))... ( -32.90, z-score = -0.30, R) >droAna3.scaffold_13340 8675061 71 - 23697760 AUGACAUUUA-UUUAUCGGCUAGCCACUGACCAGGUUU--------------------------------------------GCUUGCACAAGUGUGCAUAA-UUCCAGCGAAAUGA-- ....(((((.-......(((.((((........)))).--------------------------------------------)))(((((....)))))...-........))))).-- ( -15.50, z-score = -0.32, R) >consensus AUGACAUUUAGUAUAUCGGCCAGCC_AUGACCAGGUAUAGGUUUACUUUACUGU____C_A_GG_________________GGCUUGCACAAGUGUGCAUAA_UUCCAGGGCGAUAAGA .............(((((.((.(((........))).................................................(((((....))))).........)).)))))... (-14.88 = -15.18 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:31 2011