| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,667,540 – 17,667,631 |
| Length | 91 |
| Max. P | 0.639687 |
| Location | 17,667,540 – 17,667,631 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 75.41 |
| Shannon entropy | 0.44437 |
| G+C content | 0.45889 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -13.55 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17667540 91 - 27905053 CAAAUUGCCGCAAGAGCAGAGACCCAA-------GAUGAGAUGAGCACUAUUAUCUCGGUA----GUGGA-ACUGGGCUCAGAAUAAUGACCCAAUCGGUUCU ...((((((((....))..........-------...(((((((......)))))))))))----))(((-((((((.(((......))))))....)))))) ( -26.20, z-score = -1.77, R) >droAna3.scaffold_13340 8663911 103 - 23697760 CAAAUUACCCUGCAGAUAACUGCCAGGGAACCGAGAUGAGAUGAACAUUAUUAUCUCGAAAGGGAAUGGAGACUGGAUGCGGAAUAAUGACACGAUUUGUUCU ((((((.((((((((....))).)))))..(((...((((((((......)))))))).........(....)......)))...........)))))).... ( -26.70, z-score = -2.78, R) >droEre2.scaffold_4820 52729 96 + 10470090 CAAAUUGCC-CAAGAGCAGAGACCCAAG-AUGAGGAUGAGAUGAGCACUAUUAUCUCGGUA----GUGGA-ACUGUGCCCAGAAUAAUGACCCAAUCGGUUCU .........-...(.(((.((..(((..-.((....((((((((......)))))))).))----.))).-.)).))).)........((((.....)))).. ( -19.70, z-score = 0.06, R) >droYak2.chr3R 18491363 93 - 28832112 CAAAUUGCCGCAAGAGCAGGGACCCAA-------GAUGAGAUGAGCACUAUUAUCUCGUGA--GUGUGGA-ACUGGGCCCAGAAUAAUGACCCAAUCGGUUCU .....((((....).)))(((.(((..-------.(((((((((......))))))))).(--((.....-)))))))))........((((.....)))).. ( -28.90, z-score = -2.02, R) >droSec1.super_0 18040209 82 - 21120651 ---------CAAAUUGCAGAGACCCAA-------GAUGAGAUGAGCACUAUUAUCUCGGUA----GUGGA-ACUGGGCUCAGAAUAAUGACCCAAUCGGUUCU ---------........((((..(((.-------..((((((((......))))))))...----.))).-..((((.(((......))))))).....)))) ( -20.80, z-score = -0.94, R) >droSim1.chr3R 17474489 82 - 27517382 ---------CAAAUUGCAGAGACCCAA-------GAUGAGAUGAGCACUAUUAUCUCGGUA----GUGGA-ACUGGGCUCAAAAUAAUGACCCAAUCGGUUCU ---------........((((..(((.-------..((((((((......))))))))...----.))).-..((((.(((......))))))).....)))) ( -20.00, z-score = -1.02, R) >consensus CAAAUUGCCCCAAGAGCAGAGACCCAA_______GAUGAGAUGAGCACUAUUAUCUCGGUA____GUGGA_ACUGGGCUCAGAAUAAUGACCCAAUCGGUUCU ..................(((.((((..........((((((((......)))))))).........(....))))))))........((((.....)))).. (-13.55 = -13.75 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:29 2011