| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,644,281 – 17,644,370 |
| Length | 89 |
| Max. P | 0.795085 |
| Location | 17,644,281 – 17,644,370 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 71.91 |
| Shannon entropy | 0.54070 |
| G+C content | 0.33292 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -6.61 |
| Energy contribution | -7.39 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17644281 89 - 27905053 AAAUUAAACGAUGCUACUUCUAUUUUAUAC--UUAUAUAUGGCUUCUGUAUAUAAGUAUUCCCAAUUAAGUAGACGCCCAAAACAAGCGCA .............((((((.......((((--((((((((((...))))))))))))))........)))))).(((.........))).. ( -18.26, z-score = -2.87, R) >droSim1.chr3R 17449859 89 - 27517382 AAAUUAAACGAGGCUACUUCUAUUUUAUAC--UUAUAUAUGGCUUCUGUAUAUAAGUAUUCCCAAUUAAGUAGAUGCCCAAAACAAGCGCA .........(.(((....(((((((.((((--((((((((((...))))))))))))))........))))))).))))............ ( -20.10, z-score = -2.76, R) >droSec1.super_0 18016519 89 - 21120651 AAAUUAAGCGAGGCUACUUCUAUUUUAUAC--UUAUAUAUGGCUUCUGUAUAUAAGUAUUCCCAAUUAAGUAGAUGCCCAAAACAAGCGCA .......(((.(((....(((((((.((((--((((((((((...))))))))))))))........))))))).))).........))). ( -21.90, z-score = -2.84, R) >droYak2.chr3R 18465694 91 - 28832112 AAAUUAAACGAGGCUACGCCUAACAUAUACUUUUAUACAUGGCUUCUGUGUAUAAGUAUUCCCAAUUAAGUAGCCGCCCAAAGCAAACGCA ...........((((((.........((((((.((((((.......)))))).))))))..........)))))).......((....)). ( -21.31, z-score = -2.51, R) >droEre2.scaffold_4820 28923 89 + 10470090 AAAUUAAACGAUGCUACUCCGAAUAUGUAC--UUGUACAUGGCUUCUGUAUAUAAGUGCUCCCAAUUAAGUAGCCGUCCAAAGCAAGCGCA .........(((((((((........((((--(((((.((((...)))).))))))))).........))))).))))....((....)). ( -19.43, z-score = -1.49, R) >droVir3.scaffold_12822 3954199 75 - 4096053 ----------GAACUGCAUAAGUUACAUUUCCCUAUACUUUAUUAUUCUAUAUAG----UUUUGAUUAAGUUAAAGCUAAACAUUUGCU-- ----------.....(((...(((................(((......)))(((----(((((((...)))))))))))))...))).-- ( -8.20, z-score = -0.20, R) >consensus AAAUUAAACGAGGCUACUUCUAUUAUAUAC__UUAUACAUGGCUUCUGUAUAUAAGUAUUCCCAAUUAAGUAGACGCCCAAAACAAGCGCA .............((((((.......((((..((((((((((...))))))))))))))........)))))).(((.........))).. ( -6.61 = -7.39 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:27 2011