| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,635,303 – 17,635,356 |
| Length | 53 |
| Max. P | 0.586060 |
| Location | 17,635,303 – 17,635,356 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 63.16 |
| Shannon entropy | 0.48556 |
| G+C content | 0.46273 |
| Mean single sequence MFE | -9.30 |
| Consensus MFE | -6.77 |
| Energy contribution | -6.00 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17635303 53 - 27905053 UGUUCACAAUACACCUAUUUUGGCCAAGUUUUUUGGCCACCGCUCGCUCACCA------- ....................((((((((...))))))))..............------- ( -9.70, z-score = -1.35, R) >droYak2.chr3R 18456181 51 - 28832112 UGUUCACAAUACACCUAUUUUGGCCAAGUUUUUUGGCCACCGCC--AUCACCA------- ....................((((((((...)))))))).....--.......------- ( -9.70, z-score = -1.58, R) >droMoj3.scaffold_6540 17220032 58 - 34148556 UGGACACAAGUCACCUACUUUAGUUUGGACUAUGGGCGAGCGAU--GGCAUGAUUUAGCA .......((((((((((...((((....))))))))...((...--.)).)))))).... ( -8.50, z-score = 1.06, R) >consensus UGUUCACAAUACACCUAUUUUGGCCAAGUUUUUUGGCCACCGCU__AUCACCA_______ ....................(((((((.....)))))))..................... ( -6.77 = -6.00 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:21 2011