| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,632,845 – 17,632,965 |
| Length | 120 |
| Max. P | 0.827322 |
| Location | 17,632,845 – 17,632,965 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.17 |
| Shannon entropy | 0.17432 |
| G+C content | 0.39667 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -26.86 |
| Energy contribution | -27.62 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17632845 120 - 27905053 CCUGCGACGGCAGGUUGGUUUAUUUUGAUUGAAAACCGAGUUUAAGAUGGGCCAAUAUUAUCAUAGAAAACAUAUGCUAUCAGCUUAAUGCUGUUGAGAGGAUGAAGCGAAAUCGCUGCU (((.((((((((.((((((((((((((((((.....)))..)))))))))))))))...................((.....))....))))))))..)))....((((....))))... ( -34.20, z-score = -2.18, R) >droSim1.chr3R 17438518 120 - 27517382 CCUGCGAAGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUAUCAUACAAAACAUAUGCUAUGAGCUUAAUGCUGUUGAGAGGAUGAAGCGAAAUCGCAUAU (((((....)))))((((((((((((((.............))))))))))))))................((((((.((..((((.((.((......)).)).))))...)).)))))) ( -33.82, z-score = -3.03, R) >droSec1.super_0 18005229 120 - 21120651 CCUGCGAAGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUGUCAUACAAAACAUAUGCUAUGAGCUUAAUGCUGUUGAGAGGAUGAAGCGAAAUCGCUGCU (((((....)))))((((((((((((((.............))))))))))))))((((.((........((((...))))(((.....))).....)).)))).((((....))))... ( -33.02, z-score = -1.98, R) >droYak2.chr3R 18453668 120 - 28832112 CCUGCAGCUGUAGGUUGGUUUAUUUUGAUUGAAAACACAGCUCCAGAUGGGCCAAUAUUAUCAUACAAAACGUAUGCUAUGGACAUAAUGCUGUUGAGAGGAUGAAGCUAAAUCGAUGUU (((((....)))))((((((((.(((.(((......(((((.....(((..(((....((.(((((.....))))).))))).)))...)))))......))).))).)))))))).... ( -27.20, z-score = -0.16, R) >droEre2.scaffold_4820 17730 120 + 10470090 CCUGCAGCGGUAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUCAAGAUGGGCCAAUAUUAUCAUACAAAACAUAUGCUAUGACCCUAAUGCCGUUGAGAGGAUGAAGCUAAGUCGCUGUU (((.((((((((.(((((((((((((((.............)))))))))))))))....(((((((.......)).)))))......))))))))..)))....(((......)))... ( -34.92, z-score = -2.41, R) >consensus CCUGCGACGGCAGGUUGGUUUAUUUUGAUUGAAAACAGAGUUUAAGAUGGGCCAAUAUUAUCAUACAAAACAUAUGCUAUGAGCUUAAUGCUGUUGAGAGGAUGAAGCGAAAUCGCUGCU (((.((((((((.(((((((((((((((.............)))))))))))))))....(((((((.......)).)))))......))))))))..)))....((((....))))... (-26.86 = -27.62 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:21 2011