| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,605,169 – 17,605,243 |
| Length | 74 |
| Max. P | 0.500000 |
| Location | 17,605,169 – 17,605,243 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 65.53 |
| Shannon entropy | 0.61704 |
| G+C content | 0.30019 |
| Mean single sequence MFE | -11.52 |
| Consensus MFE | -6.89 |
| Energy contribution | -6.45 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.29 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 17605169 74 - 27905053 AUUUAAUA--AAUUAAAUGGCGUUGAUGAACUCGGAAUUGUUUGUAUUAACCUUUAACCACAAUCACCAUAAUUAU---------- ........--..(((((.((.....(..(((........)))..).....)))))))...................---------- ( -5.80, z-score = 1.09, R) >droEre2.scaffold_4770 17734674 65 - 17746568 AUUUAAUU--AGUUAAAGGGGGUUGACGAACUCUGAGUUGUUGGUAUCAACCUUUAACCAUAAUCAU------------------- ........--.((((((((..(...((.(((........))).))..)..)))))))).........------------------- ( -15.70, z-score = -1.86, R) >droYak2.chr3R 18421368 76 - 28832112 AUUAAAUUAAAGUUAAAUGGGGUUGACGAACUCGGAGUUGUUUGUAUUAACCUUUAACCACAAACACCACAAUCAU---------- ...........((((((.((.....((((((........)))))).....))))))))..................---------- ( -12.20, z-score = -0.11, R) >droSec1.super_0 17977360 74 - 21120651 AUUUAAUC--GUUUAAAUGGGGUUGACGAACUUUGAAUGGUUUGUAUUAACCUUUAACCACAAUCACCAUAAUUAU---------- ........--......((((((((((((((((......))))))).(((.....)))...))))).))))......---------- ( -12.70, z-score = -0.54, R) >droSim1.chr3R 17410830 74 - 27517382 AUUUAAUC--GUUUAAAUGGGGUUGACGAACUUUGAAUUGUUUGUAAUAACCUUUAACCACAAUCACCAUAAUUAU---------- ........--......(((((((((((((((........))))))((......)).....))))).))))......---------- ( -11.40, z-score = -0.45, R) >droMoj3.scaffold_6540 17190736 85 - 34148556 -UUUGAUUAGAUUCAAACAAGAAAUAAGAAUUCUUUUUUUCUUUCUGUUUUAUUGACCCUCAAAUUUGUCAGCUUGUCUCUUGUGU -.((((......))))((((((.(((((((........)))...........(((((..........))))).)))).)))))).. ( -11.30, z-score = 0.11, R) >consensus AUUUAAUU__AUUUAAAUGGGGUUGACGAACUCUGAAUUGUUUGUAUUAACCUUUAACCACAAUCACCAUAAUUAU__________ ..................(((((((((((((........))))))..)))))))................................ ( -6.89 = -6.45 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:16 2011