| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,587,036 – 17,587,224 |
| Length | 188 |
| Max. P | 0.996973 |
| Location | 17,587,036 – 17,587,224 |
|---|---|
| Length | 188 |
| Sequences | 3 |
| Columns | 192 |
| Reading direction | reverse |
| Mean pairwise identity | 50.09 |
| Shannon entropy | 0.69769 |
| G+C content | 0.48023 |
| Mean single sequence MFE | -57.83 |
| Consensus MFE | -18.39 |
| Energy contribution | -18.41 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.996973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17587036 188 - 27905053 UAAUUCCUUAG-GGUCACCCUAGUAGAUCUUUAGAUACACCCUAAUACUAAAUAUGCGAAUUCAGCAUGUACGCCUUUAGGGGUCGCACUCGACUCCCAUUGGU-UAUCGAGUAUGAACUACAUACUUACAUAUUGCAGAAUUUGCUAGUGUCAGCA--CUUGGCUGUCACAAGAGAUCUGCCUGUAGACCA ...........-((((((....((((((((((.......................((((((((.((((((..(((..(.(((((((....))))))).)..)))-....(((((((.....))))))))))...))).))))))))..(((.((((.--....)))).))).))))))))))..)).)))). ( -61.10, z-score = -4.20, R) >droEre2.scaffold_4784 23287692 172 - 25762168 -AAGUCCGGGGUUGUUACCCUAACAUUACACUAAUGUUACCCUAACAUUUUAUAUGCAGAUUCAGCAUAAGCGCCUCUAGGGGCCGUGCCUGGUUCUGAUAGGUCUCCCCAGUAUGGG-GAGAUA---------UGCUGUUUCUGCUUGUGUCAGCAGUCUUGCCGGCCGCA---------UUUGUAAAAUA -......(((((....)))))(((((((...)))))))........((((((((.(((((..(((((((...((((...(((((((....)))))))...))))((((((.....)))-))).))---------)))))..))))).((((((.((......)).)).))))---------..)))))))). ( -61.50, z-score = -2.85, R) >droAna3.scaffold_12948 636040 147 + 692136 --------------AAAUCUUGGGUGAUUCUUGGAU-CACCCUAGUCUUUAUAAUGUCGACUCAGCAUACCCGCCUUUGGGGGCCGUGCCUGGAUCCCACUGG--UUUCCGGUAU--------------------------CUUGCGAUCGUCAGCAUUUCCCACUGUCACG--CGGUCGGCCUGCCGACUA --------------.......((((((((....)))-)))))(((((.......((.((((.(((.(((((.(((..((((..(((....)))..))))..))--)....)))))--------------------------.))).).))).))(((...((.((((.....--)))).))..))).))))) ( -50.90, z-score = -1.75, R) >consensus _AA_UCC___G__GUAACCCUAGCAGAUCAUUAGAU_CACCCUAAUAUUUAAUAUGCAGAUUCAGCAUAAACGCCUUUAGGGGCCGUGCCUGGAUCCCAUUGGU_UAUCCAGUAUG____A_AUA_________UGC_G__UUUGCUAGUGUCAGCA_UCUUGACUGUCACA___G_UC_GCCUGUAGACUA .......................................((((((.......(((((.......))))).......)))))).(((((((.((..((....))....)).)))))))..........................(((........)))................................... (-18.39 = -18.41 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:16 2011