| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,583,029 – 17,583,127 |
| Length | 98 |
| Max. P | 0.588556 |
| Location | 17,583,029 – 17,583,127 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 59.21 |
| Shannon entropy | 0.84657 |
| G+C content | 0.46461 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -8.44 |
| Energy contribution | -8.55 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17583029 98 + 27905053 ---------UUAUUUGGUUUGGCUUG--CAUUUUAUAAUUCACUUCUUUCUGCAGCAUGGGCGGCUACUCCGCUGUGGCCACGGUGAUUUCCAAUAUCGCCGCCCGUUU ---------............(((.(--((....................))))))((((((((((((......))))))..((((((.......)))))))))))).. ( -32.35, z-score = -2.66, R) >droSim1.chr3R 17396086 98 + 27517382 ---------UUAUUUGGCUUGGCUUG--CAUUUUAUAAUUCACUUCUUUCUGCAGCAUGGGCGGCUAUUCCGCUGUGGCCACUGUGAUUUCCAACAUCGCCGCCCGUUU ---------............(((.(--((....................))))))((((((((((((......))))))...(((((.......))))).)))))).. ( -25.15, z-score = -0.35, R) >droSec1.super_0 17962652 98 + 21120651 ---------UUAUUUGGUUUGGCUUG--CAUUUUAUAAUUCACUUCUUUCUGCAGCAUGGGCGGCUAUUCCGCUGUGGCCACUGUGAUUUCCAACAUCGCCGCCCGUUU ---------............(((.(--((....................))))))((((((((((((......))))))...(((((.......))))).)))))).. ( -25.15, z-score = -0.61, R) >droYak2.chr3R 18406564 100 + 28832112 -------AUAUAUGGGAUUUGACAUU--GAUUUCAUAAUUAACUUCUUUCUGCAGCAUGGGCGGCUAUUCCGCGGUGGCCACUGUGAUUUCCAACAUCGCCGCCCGUUU -------...((((..(((.......--)))..))))...................(((((((((......(((((....)))))(((.......)))))))))))).. ( -28.30, z-score = -1.27, R) >droEre2.scaffold_4770 17719879 96 + 17746568 -------------UUGCCCCUAUUUGGACAUUCUAUAAUUGCCCUCUUUCUGCAGCAUGGGCGGCUACUCCGCUGUGGCCACUGUGAUAUCCAACAUCGCCGCCCGCUU -------------.(((.((.....))............(((.........)))))).((((((((((......))))))...(((((.......))))).)))).... ( -26.00, z-score = -0.82, R) >droAna3.scaffold_13340 8579817 89 + 23697760 -------------------UUAUUUUCAUUGAUUUGUAUUCUUUGCAACAAC-AGAAUGGGCGGAUACUCCGCAGUGGCGACUGUCAUCUCCAACAUCGCCGCCCGCUU -------------------.....(((.(((..(((((.....)))))))).-.))).((((((.....)))).(((((((.(((........)))))))))))).... ( -24.30, z-score = -1.88, R) >dp4.chr2 6441710 84 + 30794189 -------------------------UCACUAACUUUGCCAUUUUUUCCUCCACAGAAUGGGUGGAUACUCGGCAGUGGCCACGGUCAUCUCAAACAUUGCUAACCGCUU -------------------------..........((((......(((((((.....)))).))).....))))(((((....)))))..........((.....)).. ( -16.70, z-score = 0.01, R) >droPer1.super_0 268402 84 + 11822988 -------------------------UCACUAACUUUGACAUUUUUUCCUCCACAGAAUGGGUGGAUACUCGGCAGUGGCCACGGUCAUCUCAAACAUUGCUACCCGCUU -------------------------.................................((((((.......(..(((((....)))))..)........)))))).... ( -15.66, z-score = 0.33, R) >droVir3.scaffold_13047 9357128 109 - 19223366 CCAACCUAUUUAGCAUAUCUAAAUAUCUUUCUUUUUUCUGCUUUGCCGCACUUAGCAUGGGUGGCUACUCCUCGGUGGCCACAGUCAUCUCCAACAUUGCCGCACGCUU ......(((((((.....)))))))..............((..(((.(((((......))(((((((((....)))))))))...............))).))).)).. ( -24.40, z-score = -1.46, R) >droGri2.scaffold_14906 11453557 102 - 14172833 -------CUGUAAAUUGUAUUUGAUUCAUUUAUAAUUUCUAAUGAUUUGAAACAGCAUGGGUGGCUACUCGGCGGUUGCUACGGUCAUCUCUAACAUUGCUUCACGCUU -------..((((.((((.((..(.(((((..........))))).)..))))))...((((((((....(((....)))..))))))))......))))......... ( -16.90, z-score = 0.48, R) >anoGam1.chr2R 43999228 101 + 62725911 -------UUUUUGUGUUUAUGCAUAUGUCUUACAUGUCUUACUGAUUUUUACAGGCACGG-UAGUUACACGAAUGUGGCAUCGGCCUUCAACAAUGUUCUGGCCCGUUU -------....(((((....))))).(((..(((((((.....)))......((((.(((-(.((((((....))))))))))))))......))))...)))...... ( -21.60, z-score = -0.11, R) >consensus _________UUA_UUGGUUUGACUUUCACUUUUUAUAAUUCAUUUCUUUCUGCAGCAUGGGCGGCUACUCCGCUGUGGCCACGGUCAUCUCCAACAUCGCCGCCCGCUU .........................................................(((((((..........((.((....)).))...........)))))))... ( -8.44 = -8.55 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:14 2011