| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,576,600 – 17,576,650 |
| Length | 50 |
| Max. P | 0.924093 |
| Location | 17,576,600 – 17,576,650 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.18177 |
| G+C content | 0.45200 |
| Mean single sequence MFE | -13.38 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.74 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17576600 50 - 27905053 UUUACGGUCUUUUGGAAGACGGUGACUCCAGAGGUGCUAUAAAAAAUAAC ((((..((((((((((....(....))))))))).))..))))....... ( -12.60, z-score = -2.21, R) >droSim1.chr3R 17389170 50 - 27517382 UUCACAGUCUUUUGGAAGACGGUGACUCCAGAGGUGCUGUGAAAAAUAAC ((((((((((((((((....(....))))))))).))))))))....... ( -20.40, z-score = -4.38, R) >droSec1.super_0 17956172 50 - 21120651 UUCACAGUCUUUUGGAAGACGGUGACUCCAGAGGUGCUAUGAAAAAUAAC ((((.(((((((((((....(....))))))))).))).))))....... ( -14.40, z-score = -2.48, R) >droYak2.chr3R 18399996 50 - 28832112 UUCACGGUCUUUUGGAAGACGGUUACUCCAGAGGUGCUACGGAAAAUGGC (((..(((((((((((..........)))))))).)))...)))...... ( -10.40, z-score = 0.06, R) >droEre2.scaffold_4770 17713497 50 - 17746568 UUCACGGUCUUUUGGAAGACGGUCACUCCAGCGGCGCUAUGGAAAAUAAC ((((..((((.(((((..........))))).)).))..))))....... ( -9.10, z-score = 0.14, R) >consensus UUCACGGUCUUUUGGAAGACGGUGACUCCAGAGGUGCUAUGAAAAAUAAC ((((.(((((((((((....(....))))))))).))).))))....... (-12.14 = -11.74 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:14 2011