| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,548,727 – 17,548,859 |
| Length | 132 |
| Max. P | 0.545857 |
| Location | 17,548,727 – 17,548,859 |
|---|---|
| Length | 132 |
| Sequences | 9 |
| Columns | 142 |
| Reading direction | reverse |
| Mean pairwise identity | 84.29 |
| Shannon entropy | 0.31903 |
| G+C content | 0.42775 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.79 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17548727 132 - 27905053 AGCAACAUCAGCUACUAGUAGCAACAACAGCAAACUGCGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGG-CCAUGGCCGAAACGGUAAUUAUGUAGU--CAGCCUCCAAGUUGC------- .(((((....((((....)))).......((..((((((..((((((((((.(((((((.......))))))).)))).........(((-(....)))).....)))))).))))))--..))......)))))------- ( -41.50, z-score = -3.34, R) >droSim1.chr3R 23597348 132 + 27517382 AGAAACAUCAGCUACUAGUAGCAACAACAGCAAACUGCGGCAAUUGCGUAAAUGCUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGG-CCAUGGCCAAAACGGUAAUUAUGUAGU--CAGCCUCCAAGUUGC------- ..........((((....))))..((((.((.....))(((.(((((((((.(((((((.........(((........)))......((-(....)))..))))))).)))))))))--..))).....)))).------- ( -34.60, z-score = -1.32, R) >droSec1.super_6 415298 132 + 4358794 AGAAACAUCAGCUACUAGUAGCAACAACAGCAAACUGCGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAUAUACAAUGGCAAGCGG-CCAUGGCCAAAACGGUAAUUAUGUAGU--CAGCCUCCAAGUUGC------- ..........((((....))))..((((.((.....))(((.(((((((((((((((((.......)))))))).....(((((.....)-)))).(((.....)))..)))))))))--..))).....)))).------- ( -36.00, z-score = -2.08, R) >droYak2.chr3R 6385900 132 - 28832112 GACAACAUGAGCUACUACUAGCAACAACAUCAAACUGCGGCAAUUGCGUAAAUGAUGUUCUAAUAUAACAUCAAUUACAAUGGCAAGCGG-CCAUGGCCAAAACGGUAAUUAUGUAGU--CAGCCUCCAAGUUGC------- (((.((((((..((((....(((............)))(((......((((.(((((((.......))))))).)))).(((((.....)-)))).))).....)))).)))))).))--)..............------- ( -35.10, z-score = -2.09, R) >droEre2.scaffold_4770 13631111 132 + 17746568 AACAACAUGAGCUACUAGAAGCAACAACAUCAAACUGCGGCAAUUGCGUAAAUGAUGUUCUAAUAUAACAUCAAUUACAAUGGCAAGCGG-CCAUGGCCAAAACGGUAAUUAUGUAGU--CAGCCUCCAAGUUGC------- ..((((.((.(((......)))...........((((((..((((((((((.(((((((.......))))))).)))).(((((.....)-))))..........)))))).))))))--.......)).)))).------- ( -32.70, z-score = -1.45, R) >droAna3.scaffold_13340 18119510 133 + 23697760 AGCAACAUGAGAAACCAGCAGCAACAAGAACUAACUGUGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGGCCCAUGGCCAAAACAGUAAUGAUGUAGU--CAGCCUCCAAGUUGC------- .(((((.((.((.....((((.............))))(((......((((.(((((((.......))))))).))))..((((....((((...))))....((....)).....))--))))))))).)))))------- ( -34.92, z-score = -1.59, R) >dp4.chr2 23978704 120 - 30794189 -------------AACAGCAACAACUACAAGUAACUGUGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGGCCCAUGGCCAAAACGGUAAUGAUGUAGU--CAGCCUCCAAGUUGC------- -------------....(((((.((((((.((.(((((.((..((((((((.(((((((.......))))))).))))....))))))((((...))))...))))).))..))))))--..(....)..)))))------- ( -32.50, z-score = -1.59, R) >droPer1.super_3 6756606 120 - 7375914 -------------AACAGCAACAACUACAAGUAACUGUGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGGCCCAUGGCCAAAACGGUAAUGAUGUAGU--CAGCCUCCAAGUUGC------- -------------....(((((.((((((.((.(((((.((..((((((((.(((((((.......))))))).))))....))))))((((...))))...))))).))..))))))--..(....)..)))))------- ( -32.50, z-score = -1.59, R) >droWil1.scaffold_181089 3994246 140 + 12369635 UGCAACUUGGUUGGCUUUUA-CGACUGCUACAAACUGUGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGGCCCAUGGCC-AAACGGUAAUGAUGUAGCUGUAGUGCUCGGGCUCUAGUCUUC .((((...(((((.......-)))))(((((.....)))))..))))((((.(((((((.......))))))).))))...(((.((.(((((..(((.-..(((((.........)))))...))).))))))).)))... ( -42.10, z-score = -1.47, R) >consensus AGCAACAUGAGCUACUAGUAGCAACAACAACAAACUGCGGCAAUUGCGUAAAUGAUGUUCUAAUACAACAUCAAUUACAAUGGCAAGCGG_CCAUGGCCAAAACGGUAAUUAUGUAGU__CAGCCUCCAAGUUGC_______ .................(((((...........((((((...(((((((((.(((((((.......))))))).))))..((((............)))).....)))))..))))))............)))))....... (-21.42 = -21.79 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:11 2011