| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,546,599 – 17,546,689 |
| Length | 90 |
| Max. P | 0.912678 |
| Location | 17,546,599 – 17,546,689 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.08299 |
| G+C content | 0.28254 |
| Mean single sequence MFE | -15.78 |
| Consensus MFE | -14.02 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912678 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 17546599 90 - 27905053 UGCCAAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUAUAACAGCAGCA (((......((((((((.........(((((((((......))))))))).........)).)))))).(((((....))))).)))... ( -16.97, z-score = -2.25, R) >droSec1.super_6 413166 90 + 4358794 UGCCAAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUAUAACAGCAGCA (((......((((((((.........(((((((((......))))))))).........)).)))))).(((((....))))).)))... ( -16.97, z-score = -2.25, R) >droYak2.chr3R 6383763 90 - 28832112 UGCCGAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUUUAACAGCAGCA (((......((((((((.........(((((((((......))))))))).........)).)))))).((((......)))).)))... ( -16.67, z-score = -2.05, R) >droEre2.scaffold_4770 13628978 90 + 17746568 UGCCAAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUUUAGCAGCAGCA (((......((((((((.........(((((((((......))))))))).........)).)))))).((((......)))).)))... ( -16.67, z-score = -1.74, R) >droAna3.scaffold_13340 18117540 90 + 23697760 AGCCAAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUAUAACAGCAGCA .((......((((((((.........(((((((((......))))))))).........)).)))))).(((((....))))).)).... ( -16.47, z-score = -2.28, R) >dp4.chr2 23976870 90 - 30794189 AGCAGAAACACAAUUAAGACCAACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACAAUAACAGCAACA .............((((.........(((((((((......))))))))).........)))).((((.(((((....))))).)))).. ( -13.37, z-score = -2.32, R) >droPer1.super_3 6754802 90 - 7375914 AGCAGAAACACAAUUAAGACCAACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUAUAACAGCAACA .............((((.........(((((((((......))))))))).........)))).((((.(((((....))))).)))).. ( -13.37, z-score = -2.12, R) >consensus UGCCAAAACGCAAUUAAGACCGACAUUUUUAUGGUGUUCAAACUAUAAAAUUCAUAUAAUUAAAUUGCAGUUAUAACUAUAACAGCAGCA .((......((((((((.........(((((((((......))))))))).........)).)))))).(((((....))))).)).... (-14.02 = -14.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:10 2011