| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,525,914 – 17,525,974 |
| Length | 60 |
| Max. P | 0.967287 |
| Location | 17,525,914 – 17,525,974 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 90.50 |
| Shannon entropy | 0.17139 |
| G+C content | 0.30923 |
| Mean single sequence MFE | -10.28 |
| Consensus MFE | -9.94 |
| Energy contribution | -9.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17525914 60 - 27905053 CAUAAUACUUUAUUUAAGUUUAAUAAUUGGCUGAGGCUUUUGUUUUCAGUCGAUAAUCGG ..(((.((((.....)))))))...((((((((((((....).)))))))))))...... ( -11.40, z-score = -2.23, R) >droEre2.scaffold_4770 13607305 60 + 17746568 CAUAAUACUUUACUUAAGUUUAAUAAUUGGCUGGGGCUUUUGUUUUCAAUCGAUAAUCAG ..(((.((((.....)))))))...((((..((..((....).)..))..))))...... ( -6.10, z-score = -0.13, R) >droYak2.chr3R 6360428 52 - 28832112 CAUAAUACUU--------UUCAAUAAUUGGCUGAGGCUUUUGUUUUCAGUCGAUAAGCAG ..........--------.......((((((((((((....).)))))))))))...... ( -11.10, z-score = -2.14, R) >droSec1.super_6 392147 60 + 4358794 CAUAAUACUUUAUUUAAGUUUAAUAAUUGGCUGAGGCUUUUGUUUUCAGUCGAUAAUCGG ..(((.((((.....)))))))...((((((((((((....).)))))))))))...... ( -11.40, z-score = -2.23, R) >droSim1.chr3R 23573945 60 + 27517382 CAUAAUACUUUAUUUAAGUUUAAUAAUUGGCUGAGGCUUUUGUUUUCAGUCGAUAAUCGG ..(((.((((.....)))))))...((((((((((((....).)))))))))))...... ( -11.40, z-score = -2.23, R) >consensus CAUAAUACUUUAUUUAAGUUUAAUAAUUGGCUGAGGCUUUUGUUUUCAGUCGAUAAUCGG .........................((((((((((((....).)))))))))))...... ( -9.94 = -9.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:07 2011