| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,510,504 – 17,510,607 |
| Length | 103 |
| Max. P | 0.834246 |
| Location | 17,510,504 – 17,510,607 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.27439 |
| G+C content | 0.47567 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.40 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17510504 103 + 27905053 CCAUCUCCAACUCCAAGUCGAACCCGAAUCCGUACCGUUAAAAGCGUAACAACAAGUGC-UGGCCACAAUUUAUUGGCCAAGCGUGUUGAAAAGCCAA-AGCACA .................(((....)))....((..(((.....)))..)).....((((-((((((........)))))....(.(((....))))..-))))). ( -21.70, z-score = -1.27, R) >droSec1.super_6 376913 103 - 4358794 CCAUCUCCAACUCCAAGUCGAACCCGAAUCCGAACCGUUAAAAGCGUAACAACAAGUGC-UGGCCACAAUUUAUUGGCCAAGCGUGUUGAAAAGCCAA-AGCACA ...........((....(((....)))....))...(((....((....(((((...((-((((((........))))).))).)))))....))...-)))... ( -21.00, z-score = -1.03, R) >dp4.chr2 23929806 82 + 30794189 -----------------------CUGAAUCGGAACCGUUAAAAGCGUAACAACAAGUGCCUGGCCACAAUUUAUUGGCCGAGCGUGUUGAAAAGCCAACAGCACA -----------------------(((...((....))......((....(((((...((.((((((........)))))).)).)))))....))...))).... ( -20.60, z-score = -0.69, R) >droPer1.super_3 6708242 82 + 7375914 -----------------------CUGAAUCGGAACCGUUAAAAGCGUAACAACAAGUGCCUGGCCACAAUUUAUUGGCCGAGCGUGUUGAAAAGCCAACAGCACA -----------------------(((...((....))......((....(((((...((.((((((........)))))).)).)))))....))...))).... ( -20.60, z-score = -0.69, R) >consensus _______________________CCGAAUCCGAACCGUUAAAAGCGUAACAACAAGUGC_UGGCCACAAUUUAUUGGCCAAGCGUGUUGAAAAGCCAA_AGCACA ....................................(((....((....(((((...((.((((((........)))))).)).)))))....))....)))... (-20.65 = -20.40 + -0.25)
| Location | 17,510,504 – 17,510,607 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.27439 |
| G+C content | 0.47567 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -22.05 |
| Energy contribution | -23.55 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17510504 103 - 27905053 UGUGCU-UUGGCUUUUCAACACGCUUGGCCAAUAAAUUGUGGCCA-GCACUUGUUGUUACGCUUUUAACGGUACGGAUUCGGGUUCGACUUGGAGUUGGAGAUGG .(((((-..(((.(..(((((.(((.(((((........))))))-))...)))))..).)))......))))).....((..((((((.....))))))..)). ( -28.90, z-score = -0.75, R) >droSec1.super_6 376913 103 + 4358794 UGUGCU-UUGGCUUUUCAACACGCUUGGCCAAUAAAUUGUGGCCA-GCACUUGUUGUUACGCUUUUAACGGUUCGGAUUCGGGUUCGACUUGGAGUUGGAGAUGG ....((-(..((((..(((((.(((.(((((........))))))-))...)))))............(((.((((((....)))))).)))))))..))).... ( -30.10, z-score = -1.05, R) >dp4.chr2 23929806 82 - 30794189 UGUGCUGUUGGCUUUUCAACACGCUCGGCCAAUAAAUUGUGGCCAGGCACUUGUUGUUACGCUUUUAACGGUUCCGAUUCAG----------------------- ...(((((((((.(..(((((.((..(((((........)))))..))...)))))..).)))...))))))..........----------------------- ( -24.00, z-score = -1.52, R) >droPer1.super_3 6708242 82 - 7375914 UGUGCUGUUGGCUUUUCAACACGCUCGGCCAAUAAAUUGUGGCCAGGCACUUGUUGUUACGCUUUUAACGGUUCCGAUUCAG----------------------- ...(((((((((.(..(((((.((..(((((........)))))..))...)))))..).)))...))))))..........----------------------- ( -24.00, z-score = -1.52, R) >consensus UGUGCU_UUGGCUUUUCAACACGCUCGGCCAAUAAAUUGUGGCCA_GCACUUGUUGUUACGCUUUUAACGGUUCCGAUUCAG_______________________ .(.(((((((((.(..(((((.(((((((((........)))))))))...)))))..).)))...)))))).)............................... (-22.05 = -23.55 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:06 2011