| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,509,820 – 17,509,932 |
| Length | 112 |
| Max. P | 0.920147 |
| Location | 17,509,820 – 17,509,932 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.60 |
| Shannon entropy | 0.21582 |
| G+C content | 0.45891 |
| Mean single sequence MFE | -33.52 |
| Consensus MFE | -28.72 |
| Energy contribution | -29.04 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17509820 112 - 27905053 AUUUGCAUAAACCUUUUCAGCAGAACCAGUCAGU-AACCAGAUAGGUACCUACAUAUGUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAAGCACAGAUCUUCUGGCCAUUC .(((((.............)))))....(((((.-..((((...(((((........)))))))))((((((.(((((.....))))))))))).........)))))..... ( -31.32, z-score = -1.17, R) >droSim1.chr3R 23557867 108 + 27517382 AUUUGCAUAAACCUUUUCAGCAGAACCAGCCAGG-AACCACAUAGGUACCU---UA-GUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAAGCACAGAUCUUCUGGCCAUUC .(((((.............)))))....((((((-(........(((((..---..-)))))(((.((((((.(((((.....))))))))))).)))...)))))))..... ( -35.12, z-score = -2.13, R) >droSec1.super_6 376237 106 + 4358794 AUUUGCAUAAACCUUUUCAGCAGAACCAGCCAGG-AACCACAUAGGUACCU---UA-GUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAAGCACAGAUCUUCUGGCCAU-- .(((((.............)))))....((((((-(........(((((..---..-)))))(((.((((((.(((((.....))))))))))).)))...)))))))...-- ( -35.12, z-score = -2.03, R) >droYak2.chr3R_random 3237160 106 - 3277457 AUUUGCAUAAAACUUUUCAGCAGAACCAGCCAGAUAGGUACAUAGGUACCUUU----GUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAACCACAGA---UCUGGCUAUAC .(((((.............)))))...((((((((.((((((.((....)).)----)))))(((((..(((.(((((.....))))).))))).))))---))))))).... ( -38.92, z-score = -3.61, R) >droEre2.scaffold_4770 13591532 102 + 17746568 AUUUGCAUAAACCUUUUCAGCAGAACCAGCCAGA----UAGUUAGAUGCCUUU----GUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAACCACAGA---UCUGGCCAUUC .(((((.............)))))....((((((----(........((((..----.......))))..((((((.(((......)))...)))))))---))))))..... ( -27.12, z-score = -0.51, R) >consensus AUUUGCAUAAACCUUUUCAGCAGAACCAGCCAGA_AACCACAUAGGUACCU___UA_GUGCCCUGGGCUUUUGUGGGCUAUUAGCCUAGAAAGCACAGAUCUUCUGGCCAUUC .(((((.............)))))....((((((..........(((((........)))))(((.((((((.(((((.....))))))))))).)))....))))))..... (-28.72 = -29.04 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:04 2011