| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,508,340 – 17,508,436 |
| Length | 96 |
| Max. P | 0.790288 |
| Location | 17,508,340 – 17,508,436 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 84.90 |
| Shannon entropy | 0.27683 |
| G+C content | 0.45341 |
| Mean single sequence MFE | -25.44 |
| Consensus MFE | -16.16 |
| Energy contribution | -16.69 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17508340 96 + 27905053 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUUUUUUUUUAUAGACA-CAACUUGCAACUCGUCGUCGGCAGUGGCAAUAAC .......(((((.(.((((.....(((..((((((((((((((..............)))..-.))))))))))).))))))).)..)))))..... ( -26.74, z-score = -2.97, R) >droSim1.chr3R 23556340 91 - 27517382 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUUU-----UAUAGACA-CAACUUGCAACUCGUCGUCGGCAGUGGCAAUAAC .......(((((.(.((((.....(((..((((((((((((((......-----...)))..-.))))))))))).))))))).)..)))))..... ( -27.20, z-score = -3.12, R) >droSec1.super_6 374740 92 - 4358794 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUUUU----UAUAGACA-CAACUUGCAACUCGUCGUCGGCAGUGGCAAUAAC .......(((((.(.((((.....(((..((((((((((((((.......----...)))..-.))))))))))).))))))).)..)))))..... ( -27.10, z-score = -3.11, R) >droYak2.chr3R_random 3235769 89 + 3277457 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUU-------AUAGACA-CAACUUGCAGCUCGUCGUCGGCAGUGGCAAUAAC .......(((((.(.((((.....(((..((((((((((((((.....-------..)))..-.))))))))))).))))))).)..)))))..... ( -27.70, z-score = -3.00, R) >droEre2.scaffold_4770 13590055 90 - 17746568 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUU------UAUAGACA-CAACUUGCAACUCGUCGUCGGCAGUGGCAAUAAC .......(((((.(.((((.....(((..((((((((((((((.....------...)))..-.))))))))))).))))))).)..)))))..... ( -28.00, z-score = -3.46, R) >droAna3.scaffold_13340 18079521 94 - 23697760 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUUUUU---UAUAGGCAACAACUUGCAACUCUUCGGAGGCAACAGCAGAAGC ........(((((((.....)))))))..(((((((((((...........---....(....))))))))))))((((....((....)).)))). ( -22.26, z-score = -1.12, R) >dp4.chr2 6867670 83 - 30794189 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGGGUUUCUUUC---------AGACAACAACCGGCAA-----CAGCGGCAGCGGCAGUGGC .....((((((((((.....)))))))...(((((.((.(((((....---------.)).)))..)).))))-----).((....))....))).. ( -19.30, z-score = 0.77, R) >droPer1.super_3 670936 83 - 7375914 AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGGGUUUCUUUC---------AGACAACAACCUGCAA-----CAGCGGCAACGGCAGUGGC .....((((((((((.....)))))))...((((((((.(((((....---------.)).)))..)))))))-----)..((....))...))).. ( -25.20, z-score = -1.44, R) >consensus AAAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUU______UAUAGACA_CAACUUGCAACUCGUCGUCGGCAGUGGCAAUAAC ........(((((((.....)))))))..((((((((((((((..............)))....)))))))))))........((....))...... (-16.16 = -16.69 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:04 2011