| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,472,692 – 17,472,755 |
| Length | 63 |
| Max. P | 0.958845 |
| Location | 17,472,692 – 17,472,755 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 74.80 |
| Shannon entropy | 0.45634 |
| G+C content | 0.43087 |
| Mean single sequence MFE | -15.78 |
| Consensus MFE | -9.90 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17472692 63 + 27905053 -----GGUGCUCAUUUGGUU--UAUCAACAGAACCCAUAUUUGUGGUUAGUUGUGGAAGUCGAGUGGGGU -----....((((((((..(--(..((((..((((((....)).)))).))))...))..)))))))).. ( -20.00, z-score = -2.83, R) >droEre2.scaffold_4770 13553737 63 - 17746568 -----AGUGCUCAUUUGGUU--UAUCAACAAAAGCCAUAUUUGCGGUUAGUUGGGGAAGUCAAGUGGGGU -----....((((((((..(--(.(((((...((((........)))).)))))..))..)))))))).. ( -18.90, z-score = -3.35, R) >droYak2.chr3R 6310963 63 + 28832112 -----AAUGCUCAUUUGGUU--UAUCAACAAAACCCAUAUUUGUGGUUAGUGGAGGAAGUCAAGUGGGGU -----....((((((((..(--(.((.((..((((((....)).)))).)).))..))..)))))))).. ( -17.10, z-score = -2.01, R) >droSec1.super_6 338746 63 - 4358794 -----GGUGCUCAUUUGGUU--UAUCAACAGAACCCAUAUUUGUGGUUAGUUGGGAAAGUCGACUGGGGU -----....((((.(((..(--(.(((((..((((((....)).)))).)))))..))..))).)))).. ( -16.50, z-score = -1.06, R) >droSim1.chr3R 23519627 63 - 27517382 -----GGUGCUCAUUUGGUU--UAUCAACAGAACCCAUAUUUGUGGUUAGUUGGGAAAGUCGAGUGGGGU -----....((((((((..(--(.(((((..((((((....)).)))).)))))..))..)))))))).. ( -20.20, z-score = -2.98, R) >droMoj3.scaffold_6540 1762619 68 + 34148556 GAUUUCAGCCCCGUUUAUCCAACAUCCAUUUAAGACAUAUUUGUACCUCGCUCUCCAC-UCGA-UGCAUU ..................................(((....))).....((((.....-..))-.))... ( -2.00, z-score = 1.23, R) >consensus _____GGUGCUCAUUUGGUU__UAUCAACAGAACCCAUAUUUGUGGUUAGUUGGGGAAGUCGAGUGGGGU .........((((((((..(....(((((..((((((....)).)))).)))))...)..)))))))).. ( -9.90 = -11.60 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:33:01 2011